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Snakemake pipeline for 16S, 18S and ITS metagenomics using qiime2
This repository focuses on the metagenomic analysis of bioaerosols using nanopore sequencing. It highlights our use of nanopore's R10 chemistry for its high accuracy and throughput, alongside the R…
A snakemake workflow for performing metatranscriptomics
Given a set of index, fastq and sample to barcode file, generate a directory structure with each sample's forward and reverse reads contained in individual sample directories.
A snakemake pipeline to trim primers and adaptors from illumina reads and also provides useful statistics about the reads before and after trimming.