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@opr-group-bnitm

Outbreak Preparedness and Response at BNITM

This is the code repository of the Outbreak Preparedness and Response at the Bernhard Nocht Institute for Tropical Medicine.

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  1. vimop vimop Public

    Nanopore field sequencing pipeline for untargeted (aka. metagenomics) virus sequencing

    Nextflow 11 4

  2. vimop_benchmark vimop_benchmark Public

    Jupyter Notebook 1

  3. vimop_database_update vimop_database_update Public

    Shell

  4. mopx mopx Public

    Genome assembly pipeline for orthopoxviruses (e.g. mpox)

    Python

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