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    14 repositories

    • Phenoflow_package

      Public
      R package offering functionality for the advanced analysis of microbial flow cytometry data
      rmicrobiologyflow-cytometry
      HTML
      •
      GNU General Public License v2.0
      •5•5•0•0•Updated May 3, 2025May 3, 2025

    • Sakarika-Kerckhof-et-al-2023

      Public
      Accompanying code to Sakarika, Kerckhof et al. 2023 - "Growth rate and limiting substrate define the nutritional composition and cell size of microbial biomass for food applications " (in prep)
      R
      •
      GNU Affero General Public License v3.0
      •0•0•0•0•Updated Dec 11, 2023Dec 11, 2023

    • Garcia-Timermans_et_al_2023

      Public
      Accompanying code to Garcia-Timermans et al 2023
      0•0•0•0•Updated May 25, 2023May 25, 2023

    • Kerckhof_Sakarika_et_al_2021

      Public
      Accompanying code to Kerckhof & Sakarika 2021
      R
      •
      GNU General Public License v3.0
      •0•0•0•0•Updated Jan 12, 2023Jan 12, 2023

    • Beterams-et-al.-2021

      Public
      GNU General Public License v3.0
      •0•0•0•0•Updated Jun 9, 2021Jun 9, 2021

    • Phylogeny_ElectroAutotrophs

      Public
      Underlying code for the bio-informatics of Prévoteau et al. (2020)
      R
      •
      GNU General Public License v3.0
      •0•0•0•0•Updated Mar 25, 2021Mar 25, 2021

    • Dhaenens-et-al.-2021

      Public
      R Code used in the manuscript: Characterization of the endometrial and vaginal microbiome in patients with repeated implantation failure and fertile women: a cross-sectional study.
      R
      •
      GNU General Public License v3.0
      •0•0•0•0•Updated Mar 4, 2021Mar 4, 2021

    • CMETNGS

      Public
      Some convenience functions used in CMETs automated reporting pipeline for microbial amplicon sequencing
      R
      •
      GNU General Public License v3.0
      •0•2•0•0•Updated Dec 10, 2020Dec 10, 2020

    • RamanMP

      Public
      Repository for data analysis García-Timermans et al (2020b)
      HTML
      •0•0•0•0•Updated Sep 28, 2020Sep 28, 2020

    • MicroRaman

      Public
      MicroRaman is an R package to process microbial Raman Spectroscopy data
      microbiologyramandiversity-measurementheterogeneity
      R
      •
      GNU General Public License v3.0
      •3•4•7•0•Updated Jul 23, 2020Jul 23, 2020

    • FCMvsRaman

      Public
      Characterizing phenotypic heterogeneity using flow cytometry and Raman spectroscopy
      Python
      •0•1•0•0•Updated May 4, 2020May 4, 2020

    • Raman_PhenoDiv

      Public
      Raman spectroscopy-based measurements of single-cell phenotypic diversity in microbial communities
      0•0•0•0•Updated May 4, 2020May 4, 2020

    • PhenoGMM

      Public
      Repository accompanying the paper "PhenoGMM: Gaussian mixture modelling of microbial cytometry data enables efficient predictions of biodiversity".
      Python
      •3•0•0•0•Updated Nov 21, 2019Nov 21, 2019

    • HOB_Enrichment

      Public
      Repository for data analyses scripts of Hu et al. (2019)
      R
      •
      GNU General Public License v3.0
      •0•0•0•0•Updated Nov 2, 2019Nov 2, 2019