Repositories list

• HALFpipe

  Public
  ENIGMA HALFpipe is a user-friendly software that facilitates reproducible analysis of fMRI data

  pipelineneuroimagingfmri+ 3meta-analysisreproducibilitybids

  Python

  •

  Other

  •18•107•94•12•Updated Dec 19, 2025Dec 19, 2025

• wonkyconn

  Public
  Evaluating the residual motion in fMRI connectome and visualise reports

  Python

  •

  MIT License

  •5•2•6•2•Updated Dec 18, 2025Dec 18, 2025

• HALFpipe-nipoppy

  Public
  Shell

  •0•0•1•0•Updated Dec 18, 2025Dec 18, 2025

• RAMP

  Public
  Python

  •

  GNU General Public License v3.0

  •1•4•1•2•Updated Dec 15, 2025Dec 15, 2025

• Atlases

  Public
  Brain atlases for use with HALFpipe

  Python

  •0•1•1•1•Updated Dec 15, 2025Dec 15, 2025

• connectome_variability

  Public
  Quantifying variability in repeated measures of functional connectivity matrixes

  Jupyter Notebook

  •1•0•0•0•Updated Nov 11, 2025Nov 11, 2025

• ImputationProtocol

  Public
  The ENIGMA Imputation Protocol as a container for your local workstation or high-performance compute cluster

  Python

  •4•3•1•1•Updated Oct 1, 2025Oct 1, 2025

• QualityCheck

  Public
  neuroimaging

  TypeScript

  •

  GNU General Public License v3.0

  •1•0•4•4•Updated Jun 19, 2024Jun 19, 2024

• GroupLevelExamples

  Public
  Example scripts for the HALFpipe `group-level` command

  GNU General Public License v3.0

  •0•0•0•0•Updated Oct 16, 2023Oct 16, 2023

• conversion_calculator

  Public
  Python

  •0•0•0•0•Updated Sep 10, 2023Sep 10, 2023

• testdata_site3

  Public
  0•0•0•0•Updated Aug 16, 2023Aug 16, 2023

• testdata_site2

  Public
  0•0•0•0•Updated Aug 16, 2023Aug 16, 2023

• testdata_site1

  Public
  0•0•0•0•Updated Aug 16, 2023Aug 16, 2023