Repositories list

• PheEWAS_paper_v2

  Public
  Repsoitory of scripts and files used for manuscript revisions for NHANES PheEWAS v2.

  Jupyter Notebook

  •00 forks•00 stars•00 issues•00 pull requests•Updated Aug 26, 2026Aug 26, 2026

• hearing-loss-genomics

  Public
  Jupyter Notebook

  •00 forks•00 stars•00 issues•00 pull requests•Updated Aug 25, 2026Aug 25, 2026

• IGEM_Legacy

  Public
  Full version of IGEM with features likes, Search Engine, ETL, Pre-Compute Mapping List, PSA, Data Lake...

  Python

  •

  BSD 3-Clause "New" or "Revised" License

  •00 forks•00 stars•00 issues•11 pull request•Updated May 26, 2026May 26, 2026

• IGEM

  Public
  Python

  •00 forks•00 stars•00 issues•00 pull requests•Updated May 26, 2026May 26, 2026

• clarite-python

  Public
  CLeaning to Analysis: Reproducibility-based Interface for Traits and Exposures

  bioinformaticsstatisticspandas

  bioinformaticsstatisticspandas

  Python

  •

  BSD 3-Clause "New" or "Revised" License

  •22 forks•66 stars•1010 issues•66 pull requests•Updated Apr 21, 2026Apr 21, 2026

• PheEWAS_paper

  Public
  Files and code used for the first PheEWAS manuscript

  Jupyter Notebook

  •00 forks•00 stars•00 issues•00 pull requests•Updated Feb 7, 2026Feb 7, 2026

• MyNHANES

  Public
  A reproducible data pipeline for NHANES: ingestion, curation, and transformation of health survey datasets.

  Python

  •

  MIT License

  •00 forks•11 star•11 issue•00 pull requests•Updated Jun 24, 2025Jun 24, 2025

• MyNHANES_DataHub

  Public
  Host MyNHANES Master Data and Normalizations Rules

  00 forks•00 stars•00 issues•00 pull requests•Updated Jun 23, 2025Jun 23, 2025

• pandas-genomics

  Public
  Pandas ExtensionDtypes for dealing with genomics data

  genomics-datapandas-extensiondtypes

  genomics-datapandas-extensiondtypes

  Python

  •

  BSD 3-Clause "New" or "Revised" License

  •88 forks•4848 stars•99 issues•00 pull requests•Updated May 29, 2025May 29, 2025

• HallLab.github.io

  Public
  Hall Lab Website

  HTML

  •

  MIT License

  •17k17k forks•00 stars•00 issues•00 pull requests•Updated Nov 4, 2024Nov 4, 2024

• pbs_igem

  Public
  Paper do PBS about IGEM

  Jupyter Notebook

  •00 forks•00 stars•00 issues•00 pull requests•Updated Jul 16, 2024Jul 16, 2024

• dockstore-PharmCAP

  Public
  WDL

  •

  Apache License 2.0

  •00 forks•00 stars•00 issues•00 pull requests•Updated Apr 25, 2024Apr 25, 2024

• ldasimulations

  Public
  R

  •00 forks•11 star•00 issues•00 pull requests•Updated Mar 27, 2024Mar 27, 2024

• IGEM_Lite

  Public
  IGEM client version for genomics and exposome analysis, quantity data control, and associations using regression models. Explore associations, run analyses, and…

  Python

  •00 forks•11 star•00 issues•00 pull requests•Updated Feb 26, 2024Feb 26, 2024

• IGEM_Support

  Public
  This repository stores GE.db Client base update files, analyzes and scripts performed with IGEM.

  Python

  •00 forks•00 stars•00 issues•00 pull requests•Updated Dec 4, 2023Dec 4, 2023

• exe_interactions

  Public
  00 forks•00 stars•00 issues•00 pull requests•Updated Jul 27, 2023Jul 27, 2023

• filed

  Public
  old versions of programs and projects

  Jupyter Notebook

  •00 forks•00 stars•00 issues•00 pull requests•Updated Dec 27, 2022Dec 27, 2022

• ADNI_project

  Public
  Sex difference analysis on AD metabolome

  metabolomicsadnialzheimer-disease

  metabolomicsadnialzheimer-disease

  Python

  •

  GNU General Public License v3.0

  •11 fork•22 stars•00 issues•00 pull requests•Updated Apr 7, 2022Apr 7, 2022

• PLOS_Genetics_EDGE_Paper

  Public
  Scripts and results for simulated data

  Shell

  •00 forks•00 stars•00 issues•00 pull requests•Updated Apr 20, 2021Apr 20, 2021

• clarite-gui

  Public
  A GUI Version of CLARITE

  Python

  •

  GNU General Public License v3.0

  •00 forks•00 stars•55 issues•00 pull requests•Updated Mar 16, 2021Mar 16, 2021

• MTBLS374_smoking_study_secondary_analysis

  Public
  Jupyter Notebook

  •00 forks•00 stars•00 issues•00 pull requests•Updated Jan 20, 2021Jan 20, 2021

• paper_2020_tpot_actg

  Public
  Scripts for "Automated machine learning for rare variant analysis of response to antiretroviral therapy in persons living with HIV"

  Python

  •00 forks•11 star•00 issues•00 pull requests•Updated Jan 6, 2021Jan 6, 2021

• clarite

  Public
  R

  •11 fork•33 stars•55 issues•00 pull requests•Updated Oct 26, 2020Oct 26, 2020

• RNHANES

  Public
  R package for accessing and analyzing CDC NHANES data

  R

  •

  Apache License 2.0

  •1414 forks•11 star•00 issues•00 pull requests•Updated Apr 22, 2019Apr 22, 2019