IPK Gatersleben - Bioinformatics and Information Technology

All

28 repositories

edal-pgp-knowledgebase
Public
e!DAL-PGP Knowledge Base
MDX
•
Creative Commons Attribution 4.0 International
•0•1•4•0•Updated Dec 16, 2025Dec 16, 2025
edal-web
Public
Svelte
•0•0•11•0•Updated Dec 15, 2025Dec 15, 2025
arc-datasteward-circle-miappe
Public
Vue
•0•0•0•0•Updated Nov 11, 2025Nov 11, 2025
brapi4psi-slides
Public
Vue
•0•0•0•0•Updated Oct 29, 2025Oct 29, 2025
isa-wizard
Public
User-friendly application for creating FAIR- and ISA-compliant metadata for results of life science experiments
Svelte
•
MIT License
•2•6•15•0•Updated Oct 10, 2025Oct 10, 2025
arc-rdm-workshop
Public
Vue
•
Creative Commons Attribution 4.0 International
•0•0•0•0•Updated Sep 8, 2025Sep 8, 2025
mira
Public
Enabling Access to MIAPPE-compliant ISA Tab archives through BrAPI
Python
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MIT License
•0•1•0•0•Updated Aug 22, 2025Aug 22, 2025
pyBrAPI
Public
Python
•
MIT License
•0•0•0•0•Updated Aug 20, 2025Aug 20, 2025
brapi-germplasm-viewer
Public
Svelte
•0•0•0•0•Updated Aug 20, 2025Aug 20, 2025
breview
Public
Svelte
•0•0•0•0•Updated Aug 20, 2025Aug 20, 2025
divportal
Public
Svelte
•
MIT License
•0•0•0•0•Updated Aug 20, 2025Aug 20, 2025
scorpion-submission-tool
Public
Python
•0•0•0•0•Updated Jul 29, 2025Jul 29, 2025
scorpion-backup
Public
Python
•
MIT License
•0•0•0•0•Updated Jul 25, 2025Jul 25, 2025
tdf2obo
Public
Python
•0•0•0•0•Updated Jul 7, 2025Jul 7, 2025
rocrate-viewer
Public
arc ro-crate
Svelte
•
MIT License
•0•0•0•0•Updated May 27, 2025May 27, 2025
scorpion
Public
Service Monitoring & KPI Dashboard for Science
kpi monitoring-tool nfdi nfdi4biodiversity
Svelte
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MIT License
•1•6•13•1•Updated Apr 17, 2025Apr 17, 2025
broker
Public
Python
•
MIT License
•0•0•0•0•Updated Mar 6, 2025Mar 6, 2025
divassociate
Public
Nextflow
•
MIT License
•0•0•0•0•Updated Jan 27, 2025Jan 27, 2025
odrl-builder
Public
Svelte
•
MIT License
•0•12•1•0•Updated Dec 20, 2024Dec 20, 2024
scorpion-client
Public
This project is a high-level interface designed to interact with the API of Scorpion.
Python
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MIT License
•0•1•0•0•Updated Sep 12, 2024Sep 12, 2024
brapi2arc
Public
This API server allows researchers to submit phenotyping observations to a dataset stored as an Annotated Research Context (ARC). The ARC provides a standardized structure for capturing and sharing research data, enabling reproducibility and transparency in scientific investigations.
brapi brapi-phenotyping brapi-server rocrate
Python
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MIT License
•0•1•0•0•Updated Sep 5, 2024Sep 5, 2024
blast2galaxy
Public
A Python package providing a CLI and API to perform BLAST+ and DIAMOND queries against public or private Galaxy servers
bioinformatics blast galaxy galaxy-project bioinformatics-tool
Python
•
MIT License
•0•1•0•0•Updated Sep 3, 2024Sep 3, 2024
bioconda-recipes
Public
Conda recipes for the bioconda channel.
Shell
•
MIT License
•3.7k•0•0•0•Updated Sep 2, 2024Sep 2, 2024
divimpute
Public
Nextflow
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GNU General Public License v3.0
•0•0•0•0•Updated Mar 13, 2024Mar 13, 2024
biosamples-tool
Public
A tool for convenient querying of the BioSamples database.
Svelte
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MIT License
•0•0•0•0•Updated Jul 19, 2023Jul 19, 2023
divbrowse
Public
A web application for interactive visualization and exploratory data analysis of variant call matrices
visualization bioinformatics genomics gff3 data-visualization vcf principal-component-analysis genomics-visualization genomics-data genomics-analysis
Svelte
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MIT License
•3•21•5•0•Updated Jul 17, 2023Jul 17, 2023
isa-json2tab
Public
simple stateless backend to convert ISA-JSON to ISA-Tab
Python
•
MIT License
•1•0•0•0•Updated Jan 12, 2023Jan 12, 2023
isa4j
Public
Fast and Scalable Java Library for Writing ISA-Tab Files
isa isatab biohackeu21
Java
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MIT License
•4•2•2•5•Updated Dec 8, 2022Dec 8, 2022