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    14 repositories

    • igseqhelper

      Public
      Antibody analysis umbrella package
      snakemakeimmunology
      Python
      •0•0•0•0•Updated Nov 4, 2025Nov 4, 2025

    • Habib_et_al_2025_HammingDistance

      Public
      Script to identify regions of differential selection across the HIV or SHIV envelope gene in longitudinal single genome sequencing data.
      R
      •
      MIT License
      •0•0•0•0•Updated Oct 30, 2025Oct 30, 2025

    • chiimp

      Public
      Computational, High-throughput Individual Identification through Microsatellite Profiling
      r-packagetandem-repeatsmicrosatellitesshort-tandem-repeats
      R
      •
      GNU Affero General Public License v3.0
      •3•4•9•0•Updated Oct 23, 2025Oct 23, 2025

    • Habib_et_al_2025_igseq

      Public
      Analysis workflow for lineage tracing rhesus macaque antibody data for Habib et al. 2025.
      Python
      •0•0•0•0•Updated Sep 25, 2025Sep 25, 2025

    • ARMADiLLO

      Public
      C++
      •
      Other
      •1•0•0•0•Updated Sep 18, 2025Sep 18, 2025

    • umbra

      Public
      Python package and executable for Linux for managing Illumina sequencing runs
      bioinformaticssequencingillumina
      Python
      •
      GNU Affero General Public License v3.0
      •0•3•11•0•Updated Sep 18, 2025Sep 18, 2025

    • igseq

      Public
      IgSeq utilities
      bioinformaticsimmunology
      Python
      •1•1•5•1•Updated Jun 12, 2025Jun 12, 2025

    • partis

      Public
      B- and T-cell receptor sequence annotation, simulation, clonal family and germline inference, and affinity prediction
      C++
      •
      GNU General Public License v3.0
      •34•0•0•0•Updated Aug 20, 2024Aug 20, 2024

    • MINING-D

      Public
      A tool for de novo inference of D genes from immunosequencing data in diverse species
      Python
      •1•0•0•0•Updated Jul 25, 2024Jul 25, 2024

    • SONAR

      Public
      Software for Ontogenic aNalysis of Antibody Repertoires
      Python
      •
      GNU General Public License v3.0
      •9•0•0•0•Updated Apr 13, 2024Apr 13, 2024

    • vquest

      Public
      Automate IMGT V-QUEST usage on imgt.org
      bioinformaticsimmunologyimgt
      Python
      •
      GNU Affero General Public License v3.0
      •3•14•2•0•Updated Oct 11, 2022Oct 11, 2022

    • chiimp-paper

      Public
      Supporting code for the microsatellite genotyping paper introducing CHIIMP
      reproducible-researchtandem-repeatsmicrosatellitesshort-tandem-repeats
      Makefile
      •1•1•0•0•Updated Feb 1, 2021Feb 1, 2021

    • lassie

      Public
      Select sites and sequences from a serially sampled alignment
      Python
      •
      Other
      •3•0•0•0•Updated Apr 10, 2019Apr 10, 2019

    • genbank-sub-20181109-dloop

      Public
      GenBank Submission 2018/11/09
      genbankncbi
      Python
      •0•1•0•0•Updated Nov 21, 2018Nov 21, 2018