PacBio

All

106 repositories

wdl-common
Public
WDL
•
BSD 3-Clause Clear License
•13•5•0•1•Updated Dec 22, 2025Dec 22, 2025
HiFi-human-WGS-WDL
Public
WDL
•
BSD 3-Clause Clear License
•47•74•7•1•Updated Dec 22, 2025Dec 22, 2025
pbAA
Public
8•27•1•0•Updated Dec 22, 2025Dec 22, 2025
portello
Public
Transfer HiFi read mappings from their own assembly contigs to a standard reference
Rust
•
Other
•0•27•1•0•Updated Dec 21, 2025Dec 21, 2025
wdl-dockerfiles
Public
Python
•
BSD 3-Clause Clear License
•2•3•0•5•Updated Dec 19, 2025Dec 19, 2025
HiFi-somatic-WDL
Public
Tumor-normal variant calling workflow using HiFi reads
WDL
•
BSD 3-Clause Clear License
•11•24•2•2•Updated Dec 12, 2025Dec 12, 2025
pbcore
Public
A Python library for reading and writing PacBio® data files
Python
•
Other
•27•41•3•3•Updated Dec 11, 2025Dec 11, 2025
owl
Public
Rust
•
Other
•1•13•0•0•Updated Dec 10, 2025Dec 10, 2025
pb-StarPhase
Public
A phase-aware pharmacogenomic diplotyper for PacBio datasets
pacbio pharmacogenomics hifi
Rust
•
Other
•3•20•0•0•Updated Dec 9, 2025Dec 9, 2025
aardvark
Public
A tool for sniffing out the differences in vari-Ants
benchmarking variant-calls sequencing-data variant-comparison
Rust
•
MIT License
•0•34•0•0•Updated Dec 8, 2025Dec 8, 2025
trgt
Public
Tandem repeat genotyping and visualization from PacBio HiFi data
Rust
•
Other
•12•129•44•0•Updated Dec 8, 2025Dec 8, 2025
trgt-denovo
Public
De novo tandem repeat calling from PacBio HiFi data
Jupyter Notebook
•
Other
•3•19•1•0•Updated Dec 5, 2025Dec 5, 2025
.github
Public
0•1•0•0•Updated Dec 4, 2025Dec 4, 2025
MethBat
Public
A battery of methylation tools for PacBio HiFi reads
methylation segmentation hifi pacbio-sequencing
BSD 3-Clause Clear License
•1•45•0•0•Updated Dec 2, 2025Dec 2, 2025
mitorsaw
Public
Other
•0•6•0•0•Updated Dec 1, 2025Dec 1, 2025
vclust
Public
A method to locate variation clusters
Rust
•
Other
•2•7•0•0•Updated Nov 27, 2025Nov 27, 2025
pbmm2
Public
A minimap2 frontend for PacBio native data formats
Raku
•
BSD 3-Clause Clear License
•34•207•2•2•Updated Nov 14, 2025Nov 14, 2025
jasmine
Public
Call select base modifications in PacBio HiFi reads
BSD 3-Clause Clear License
•0•15•0•0•Updated Nov 11, 2025Nov 11, 2025
paraphase
Public
HiFi-based caller for highly similar paralogous genes
Python
•
Other
•13•58•7•0•Updated Nov 7, 2025Nov 7, 2025
sawfish
Public
Joint structural variant and copy number variant caller for HiFi sequencing data
variant-calling cnv structural-variation hifi structural-variants
Rust
•
Other
•6•66•4•0•Updated Nov 4, 2025Nov 4, 2025
trgt-lps
Public
0•2•0•0•Updated Oct 30, 2025Oct 30, 2025
SVTopo
Public
Complex structural variant visualization for HiFi sequencing data
bioinformatics genomics data-visualization structural-variation genomics-visualization hifi structural-variants
Rust
•
Other
•5•45•3•0•Updated Oct 24, 2025Oct 24, 2025
kivvi
Public
KIV2/D4Z4 genotyper using HiFi WGS data
Other
•0•7•1•0•Updated Oct 23, 2025Oct 23, 2025
smrtlink-install-guide
Public
HTML
•
BSD 3-Clause Clear License
•0•0•0•0•Updated Oct 15, 2025Oct 15, 2025
ptcp
Public
PureTarget Carrier Pipeline (PTCP)
Python
•
BSD 3-Clause Clear License
•0•7•0•0•Updated Oct 3, 2025Oct 3, 2025
skera
Public
SKERA - Deconcat PacBio reads
BSD 3-Clause Clear License
•2•8•0•0•Updated Oct 1, 2025Oct 1, 2025
Paraviewer
Public
Python
•
Other
•1•8•0•1•Updated Sep 26, 2025Sep 26, 2025
reference_genomes
Public
Shell
•
BSD 3-Clause Clear License
•0•10•0•1•Updated Sep 24, 2025Sep 24, 2025
ParaviewerPTCPDemo
Public
HTML
•0•0•0•0•Updated Sep 23, 2025Sep 23, 2025
ParaviewerWGSDemo
Public
HTML
•0•0•0•0•Updated Sep 23, 2025Sep 23, 2025