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    • giql

      Public
      SQL dialect for genomic range queries.
      Python
      0500Updated Dec 19, 2025Dec 19, 2025
    • Genomics research toolkit for jointly embedding Hi-C 3D chromatin contact matrices into the same vector space
      Python
      1811Updated Dec 17, 2025Dec 17, 2025
    • oxbow

      Public
      Oxbow makes genomic data ready for high-performance analytics.
      Rust
      1314671Updated Dec 15, 2025Dec 15, 2025
    • Jupyter Notebook
      0000Updated Jul 13, 2025Jul 13, 2025
    • tcga-nmf

      Public
      TCGA ATAC-seq NMF notebook
      Python
      0100Updated Jun 18, 2025Jun 18, 2025
    • giql-cicd

      Public
      CI/CD workflows for GIQL
      Shell
      2000Updated May 1, 2025May 1, 2025
    • tcga-db

      Public
      Local database of TCGA metadata
      Python
      0000Updated Jan 20, 2025Jan 20, 2025
    • Quickly and accurately render even the largest data.
      Python
      376000Updated Jan 6, 2025Jan 6, 2025
    • LD Score Regression (LDSC)
      Python
      366203Updated Oct 31, 2024Oct 31, 2024
    • A Snakemake executor plugin for submitting jobs to a LSF cluster
      Python
      7001Updated Aug 7, 2024Aug 7, 2024
    • Simple Jupyter chat UI for LangChain
      Jupyter Notebook
      21101Updated Jul 3, 2024Jul 3, 2024
    • JavaScript
      1101Updated May 19, 2024May 19, 2024
    • deepC

      Public
      A neural network framework for predicting the Hi-C chromatin interactions from megabase scale DNA sequence
      HTML
      14000Updated Apr 12, 2024Apr 12, 2024
    • dask-ngs

      Public
      Scalable access to bioinformatics data with Dask and Oxbow
      Python
      3115Updated Mar 4, 2024Mar 4, 2024
    • Jupyter Notebook
      0201Updated Mar 1, 2024Mar 1, 2024
    • VCFormer

      Public
      Read and flatten VCF data into DataFrames
      Python
      0400Updated Aug 11, 2023Aug 11, 2023
    • Remote Frame Buffer for Jupyter
      Python
      16000Updated Jun 9, 2023Jun 9, 2023
    • saimin

      Public
      Rust
      0710Updated Apr 28, 2023Apr 28, 2023
    • bbs741

      Public
      Jupyter Notebook
      0000Updated Nov 13, 2022Nov 13, 2022
    • embedden

      Public
      Lego blocks for neighbor embedding and projection pipelines
      C++
      0000Updated Sep 20, 2020Sep 20, 2020