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@bionanoimaging Nanoimaging at the IPHT Leibniz Institut Jena

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    38 repositories

    • FourierTools.jl

      Public
      Tools for working with Fourier space.
      interpolationjuliafourierarraysfftimageprocessing
      Julia
      •
      MIT License
      •10•61•9•2•Updated Dec 15, 2025Dec 15, 2025

    • bionanoimaging.github.io

      Public
      Repository for hosting the website files
      physicsjenamicroscopyheintzmann
      SCSS
      •6•4•0•0•Updated Oct 31, 2025Oct 31, 2025

    • NDTools.jl

      Public
      A lightweight package for utility functions for working with multi-dimensional data
      Julia
      •
      MIT License
      •1•6•5•0•Updated Aug 10, 2025Aug 10, 2025

    • NanoImagingPack

      Public
      Python pack for nanoimaging-related tasks
      Python
      •1•1•0•0•Updated Aug 7, 2025Aug 7, 2025

    • SecondHarmonicGeneration.jl

      Public
      A small simulation of the SHG of collagen 1, generated under various illumination conditions
      Julia
      •0•0•0•0•Updated Jul 22, 2025Jul 22, 2025

    • PSFDistiller.jl

      Public
      Distills a point spread function (PSF) from a measurement of beads by selecting local maxima that are separate enough from other ones.
      Julia
      •
      MIT License
      •2•6•1•0•Updated Jul 16, 2025Jul 16, 2025

    • computingSeminar

      Public
      0•2•0•0•Updated Jun 17, 2025Jun 17, 2025

    • SeparableFunctions.jl

      Public
      Calculates multidimensional functions faster by exploiting their separability.
      Julia
      •
      MIT License
      •0•7•1•0•Updated May 29, 2025May 29, 2025

    • View5D

      Public
      An image viewer for up to 5-dim data www.nanoimaging.de/View5D
      Java
      •
      MIT License
      •0•6•0•0•Updated May 11, 2025May 11, 2025

    • TiledViews.jl

      Public
      Allows an AbstractArray, to look like an AbstractArray with one more dimension and the tiles are represented along this dimension.
      Julia
      •
      MIT License
      •1•13•0•0•Updated May 3, 2025May 3, 2025

    • IndexFunArrays.jl

      Public
      Fun with indices (and functions on them)
      juliaarrayjulia-language
      Julia
      •
      MIT License
      •1•8•3•0•Updated Mar 19, 2025Mar 19, 2025

    • PSFToolbox-Matlab

      Public
      Includes various ways to calculate point spread functions (PSFs) with a focus on high NA fluorescence microscopy.
      MATLAB
      •
      GNU General Public License v2.0
      •1•7•1•0•Updated Dec 23, 2024Dec 23, 2024

    • Scalable-Angular-Spectrum-Method-SAS

      Public
      Implementations of the Scalable Angular Spectrum Method
      Jupyter Notebook
      •
      MIT License
      •7•60•1•2•Updated Jun 20, 2024Jun 20, 2024

    • Image-Processing-In-Microscopy-2023-2024

      Public
      Julia
      •0•0•0•0•Updated Oct 18, 2023Oct 18, 2023

    • DiscoverEpidemicModel.jl

      Public
      With this repo we provide a toolbox for automatic model discovery in epidemiology. We therefor start with Sars-CoV-2 modelling.
      Julia
      •
      MIT License
      •0•0•1•10•Updated Jun 14, 2023Jun 14, 2023

    • Khoros

      Public
      MATLAB
      •0•1•0•0•Updated Apr 14, 2023Apr 14, 2023

    • khorosBinLin64

      Public
      binaries for the khoros-inspired c-helpers
      MIT License
      •0•0•0•0•Updated Apr 14, 2023Apr 14, 2023

    • cameracalibration

      Public
      This is a Napari Plugin that calibrates your camera w.r.t. readnoise and gain
      Python
      •
      GNU General Public License v3.0
      •0•1•0•0•Updated Dec 29, 2022Dec 29, 2022

    • matlab_tools

      Public
      MATLAB
      •0•3•0•0•Updated Nov 23, 2022Nov 23, 2022

    • Beamerscope-ANDROID

      Public
      Beamerscope-ANDROID
      C++
      •1•2•0•1•Updated Oct 30, 2022Oct 30, 2022

    • EM-guided_deconv

      Public
      MATLAB
      •0•0•0•0•Updated Aug 11, 2022Aug 11, 2022

    • JuliaConvolutionPerformance

      Public
      Performance comparison of different convolution approaches
      0•0•0•0•Updated Jul 6, 2022Jul 6, 2022

    • ImageSharpness.jl

      Public
      Julia
      •
      MIT License
      •0•0•0•0•Updated May 17, 2022May 17, 2022

    • Introduction_Image_Processing_Julia

      Public
      Material for 6th NORMIC Image Processing Workshop
      MIT License
      •0•5•0•0•Updated May 26, 2021May 26, 2021

    • ShiftedArrays.jl

      Public
      Lazy shifted arrays for data analysis in Julia
      Julia
      •
      Other
      •10•0•0•0•Updated Apr 10, 2021Apr 10, 2021

    • cellSTORM-ANDROID

      Public
      Application to readout BW-frames from HUAWEI derived from Camera2RAW and FreedCAM
      Java
      •
      Apache License 2.0
      •2•3•0•0•Updated May 14, 2020May 14, 2020

    • Tensorflow_MultipleScattering

      Public
      Repo to compare different single/multiple scattering algorithms computationally.
      Python
      •1•2•0•0•Updated Feb 20, 2020Feb 20, 2020

    • SmartLense

      Public
      Android Application for controlling a LED-Matrix of a 3D-printed Microscope Framework.
      Java
      •0•0•0•0•Updated Aug 12, 2019Aug 12, 2019

    • cellSTORM-Tensorflow

      Public
      Image-to-Image network to localize dSTORM events in Tensorflow. Publication link: https://arxiv.org/abs/1804.06244
      Python
      •1•7•0•0•Updated Dec 15, 2018Dec 15, 2018

    • cellSTORM_TENSORFLOW

      Public
      This is the APP to localize dSTORM experiments using an Android cellphone and an image-to-image GAN
      C++
      •0•2•0•0•Updated Dec 15, 2018Dec 15, 2018