Repositories list

• NextGenETL

  Public
  ETL Processes and Scripts (2019)

  Python

  •4•3•0•3•Updated Dec 22, 2025Dec 22, 2025

• BigQueryTableSearch

  Public
  Standalone Big Query Table Search System

  HTML

  •

  Apache License 2.0

  •0•0•0•0•Updated Dec 22, 2025Dec 22, 2025

• BQEcosystem

  Public
  BQ Table descriptions/schema and installation scripts

  Shell

  •3•0•2•0•Updated Dec 17, 2025Dec 17, 2025

• ISB-CGC-Static

  Public
  Static CGC Website

  HTML

  •

  Apache License 2.0

  •0•0•0•0•Updated Dec 17, 2025Dec 17, 2025

• ISB-CGC-API

  Public
  Google Endpoints API Used to Drive CGC Webapp

  Python

  •

  Apache License 2.0

  •3•2•0•0•Updated Dec 4, 2025Dec 4, 2025

• ISB-CGC-Webapp

  Public
  ISB CGC Webapp

  JavaScript

  •

  Apache License 2.0

  •10•12•0•0•Updated Dec 3, 2025Dec 3, 2025

• readthedocs

  Public
  Documentation for the ISB-CGC on Read the Docs.

  Python

  •

  Apache License 2.0

  •16•11•1•0•Updated Nov 6, 2025Nov 6, 2025

• Community-Notebooks

  Public
  Jupyter Notebook

  •

  Apache License 2.0

  •6•14•1•0•Updated Sep 24, 2025Sep 24, 2025

• cananolab

  Public
  caNanoLab is a web-based portal designed to capture nanotechnology data.

  JavaScript

  •

  Other

  •6•1•0•1•Updated Jul 21, 2025Jul 21, 2025

• ISB-CGC-Common

  Public
  Shared code between repositories

  Python

  •5•2•0•0•Updated Jul 9, 2025Jul 9, 2025

• bq-search-cron

  Public
  Cron job to keep BQ Search current

  Python

  •

  Apache License 2.0

  •0•0•0•0•Updated Jul 9, 2025Jul 9, 2025

• ICDC

  Public
  Python

  •

  Apache License 2.0

  •0•0•1•0•Updated Jul 2, 2025Jul 2, 2025

• ML-Develop

  Public
  Development of Machine Learning Notebooks

  Jupyter Notebook

  •

  Apache License 2.0

  •0•0•0•0•Updated Jun 5, 2025Jun 5, 2025

• ISB-CGC-HTAN-Demos

  Public
  Jupyter Notebook

  •

  Apache License 2.0

  •1•0•0•0•Updated May 14, 2025May 14, 2025

• ISB-CGC-Demos

  Public
  Jupyter Notebook

  •0•3•0•0•Updated Oct 4, 2024Oct 4, 2024

• TP53

  Public
  Code for the TP53 database project

  JavaScript

  •

  Apache License 2.0

  •1•3•0•0•Updated Aug 8, 2024Aug 8, 2024

• isb-cgc-ctb

  Public
  Chernobyl Tissue Biobank

  HTML

  •

  Apache License 2.0

  •0•0•0•0•Updated Aug 7, 2024Aug 7, 2024

• ISB-CGC-CytoConverter

  Public
  R

  •

  GNU General Public License v3.0

  •1•2•0•0•Updated Feb 29, 2024Feb 29, 2024

• BQLogProcess

  Public
  For processing BQ logs

  Apache License 2.0

  •0•0•0•0•Updated Feb 29, 2024Feb 29, 2024

• SL-Cloud-F1000

  Public
  Jupyter Notebook

  •

  Apache License 2.0

  •0•1•0•0•Updated Mar 7, 2023Mar 7, 2023

• ISB-CGC-data-proc

  Public
  code for uploading cancer data into GCS and BigQuery

  Python

  •

  Apache License 2.0

  •7•1•0•4•Updated Nov 2, 2022Nov 2, 2022

• CytoConverter

  Public
  R

  •4•0•0•0•Updated Jul 15, 2022Jul 15, 2022

• RunningWorkflows-on-the-GoogleCloud

  Public
  Shell

  •4•3•0•1•Updated Mar 4, 2022Mar 4, 2022

• radiology-viewer

  Public
  Radiology Viewer

  Shell

  •0•1•0•0•Updated Aug 9, 2021Aug 9, 2021

• ViewerDockerContainer

  Public
  Dockerfile for caMicroscope viewer. Includes Apache, PHP, IIPSrv and caMicroscope.

  JavaScript

  •

  Apache License 2.0

  •8•1•0•0•Updated Aug 9, 2021Aug 9, 2021

• quip_distro

  Public
  Shell

  •

  BSD 3-Clause "New" or "Revised" License

  •16•0•0•0•Updated Aug 9, 2021Aug 9, 2021

• caMicroscope

  Public
  Digital pathology image viewer with support for human/machine generated annotations and markups.

  JavaScript

  •

  Apache License 2.0

  •308•0•0•0•Updated Aug 9, 2021Aug 9, 2021

• User-Data-Processor

  Public
  This is a repository devoted to the user data processor.

  Python

  •

  Apache License 2.0

  •1•1•0•0•Updated Feb 7, 2021Feb 7, 2021

• VariantData2BigQuery

  Public
  0•0•0•0•Updated Dec 11, 2020Dec 11, 2020

• ohif-viewer

  Public
  OHIF zero-footprint DICOM viewer and oncology specific Lesion Tracker, plus shared Meteor packages

  JavaScript

  •

  MIT License

  •4.1k•0•0•0•Updated Aug 1, 2019Aug 1, 2019