Skip to content

@owkin Owkin

Change the repository type filter

All

    Repositories list

    68 repositories

    • nemo-rl-poc

      Public
      Scalable toolkit for efficient model reinforcement
      Python
      •
      Apache License 2.0
      •199•0•0•1•Updated Dec 19, 2025Dec 19, 2025

    • fedpydeseq2-paper-experiments

      Public
      Python
      •
      MIT License
      •0•0•0•1•Updated Dec 15, 2025Dec 15, 2025

    • fedpydeseq2-datasets

      Public
      Python
      •
      MIT License
      •0•0•0•1•Updated Dec 15, 2025Dec 15, 2025

    • fedpydeseq2

      Public
      A federated implementation of PyDESeq2, based on Substra.
      pythonbioinformaticsrna-seqtranscriptomicsdifferential-expressionfederated-learning
      Python
      •
      MIT License
      •0•15•0•1•Updated Dec 15, 2025Dec 15, 2025

    • docker-dependency-updater

      Public
      Checks system dependencies and update them if required
      environment--productionbu--dept-data-platformowner--squad-dse
      TypeScript
      •
      Apache License 2.0
      •0•1•0•7•Updated Dec 15, 2025Dec 15, 2025

    • imilia

      Public
      IMILIA: interpretable multiple instance learning for inflammation prediction in IBD from H&E whole slide images
      Python
      •
      Other
      •0•4•1•0•Updated Dec 11, 2025Dec 11, 2025

    • plism-benchmark

      Public
      Official repository for PLISM robustness benchmark of pathology foundation models (MICCAI 2025)
      Python
      •2•16•0•0•Updated Nov 30, 2025Nov 30, 2025

    • openslide

      Public
      C library for reading virtual slide images
      C
      •
      GNU Lesser General Public License v2.1
      •246•1•0•0•Updated Nov 28, 2025Nov 28, 2025

    • miso_code

      Public
      Jupyter Notebook
      •
      Other
      •0•5•0•0•Updated Nov 26, 2025Nov 26, 2025

    • SpaMIL

      Public
      Multiple Instance Learning for Spatial Transcriptomics
      Python
      •
      Other
      •0•0•0•0•Updated Nov 3, 2025Nov 3, 2025

    • leap

      Public
      Predicting gene essentiality and drug response from perturbation screens in preclinical cancer models. Repository for the paper https://arxiv.org/abs/2502.15646
      Python
      •
      Other
      •0•2•0•0•Updated Oct 30, 2025Oct 30, 2025

    • code-ffcd-cms-prediction

      Public
      Python
      •
      Other
      •0•0•0•0•Updated Oct 3, 2025Oct 3, 2025

    • fedeca

      Public
      Code repository associated with the FedECA article
      survival-analysiscausal-inferencefederated-learning
      Python
      •
      Other
      •3•14•9•1•Updated Sep 30, 2025Sep 30, 2025

    • flower-fedeca

      Public
      Python
      •
      Other
      •0•3•0•0•Updated Sep 30, 2025Sep 30, 2025

    • decoding_biology_hackathon

      Public
      decoding_biology_hackathon
      Jupyter Notebook
      •0•3•0•0•Updated Sep 29, 2025Sep 29, 2025

    • openslide-rs

      Public
      Rust bindings for Openslide
      bu--dept-diagnostics-toolsenvironment--productionowner--hichamazimani
      Rust
      •
      Apache License 2.0
      •5•0•0•0•Updated Sep 10, 2025Sep 10, 2025

    • histoplus

      Public
      Python
      •
      Other
      •4•55•4•0•Updated Aug 27, 2025Aug 27, 2025

    • deepdeconv-fork

      Public
      Deep probabilistic analysis of single-cell omics data
      Python
      •
      BSD 3-Clause "New" or "Revised" License
      •428•2•0•2•Updated Aug 5, 2025Aug 5, 2025

    • deepdeconv-fork-fork

      Public
      Deep probabilistic analysis of single-cell omics data
      Python
      •
      BSD 3-Clause "New" or "Revised" License
      •428•0•0•0•Updated Jul 29, 2025Jul 29, 2025

    • philips-isyntax-rs

      Public
      Rust bindings for Philips Pathology SDK
      bu--dept-diagnostics-toolsenvironment--productionowner--hichamazimani
      Rust
      •
      Apache License 2.0
      •4•0•0•0•Updated Jul 23, 2025Jul 23, 2025

    • PyDeconv

      Public
      Python implementation of bulk RNAseq deconvolution algorithms
      pythonbioinformaticsrnaseqdeconvolution
      Python
      •
      Other
      •0•43•0•0•Updated Jul 21, 2025Jul 21, 2025

    • nnUNet

      Public
      Forking the nnunet repository to be able to develop and modify functionalities.
      Python
      •
      Apache License 2.0
      •2.2k•0•0•0•Updated Jul 8, 2025Jul 8, 2025

    • gdm-hackathon

      Public
      Python
      •0•0•0•0•Updated Jul 5, 2025Jul 5, 2025

    • tsm

      Public
      Code and data for the paper "Robust sensitivity control in digital pathology via tile score distribution matching", published in MICCAI 2025.
      Python
      •
      Other
      •0•4•0•0•Updated Jun 30, 2025Jun 30, 2025

    • cytocommunity_ofta

      Public
      A spatial omics data analysis tool that enables both unsupervised and supervised discovery of complex tissue cellular neighborhoods from cell phenotypes.
      Jupyter Notebook
      •
      MIT License
      •14•0•0•0•Updated Jun 4, 2025Jun 4, 2025

    • TRIDENT

      Public
      Toolkit for large-scale whole-slide image processing.
      Python
      •
      Other
      •99•1•0•0•Updated May 5, 2025May 5, 2025

    • owkin-eva

      Public
      Evaluation framework for oncology foundation models (FMs)
      Python
      •
      Apache License 2.0
      •35•1•0•0•Updated May 2, 2025May 2, 2025

    • Patho-Bench

      Public
      Standardized benchmark for computational pathology foundation models.
      Python
      •
      Other
      •24•1•0•0•Updated Apr 3, 2025Apr 3, 2025

    • legitimate-uq-metrics

      Public
      This repository contains the code implementation to reproduce the experiments presented in our paper on uncertainty quantification metrics for classification tasks.
      Python
      •
      MIT License
      •0•1•0•0•Updated Mar 4, 2025Mar 4, 2025

    • Open-Reasoner-Zero

      Public
      Official Repo for Open-Reasoner-Zero
      Python
      •
      MIT License
      •119•0•0•0•Updated Mar 3, 2025Mar 3, 2025