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@mastodon-sc Mastodon Science

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    32 repositories

    • mastodon

      Public
      Mastodon – a large-scale tracking and track-editing framework for large, multi-view images.
      javaimglib2interactive-analysisinteractive-visualizationstracking-algorithmbioimage-analysismicroscopy-imageslarge-imagestrackmatecell-lineage
      Java
      •
      BSD 2-Clause "Simplified" License
      •21•80•21•3•Updated Dec 19, 2025Dec 19, 2025

    • mastodon-documentation

      Public
      The documentation of the Mastodon bioimage analysis tool.
      Python
      •1•1•0•0•Updated Dec 16, 2025Dec 16, 2025

    • mastodon-deep-lineage

      Public
      A collection of plugins to analyse lineages of tracked objects in Mastodon
      Java
      •
      BSD 2-Clause "Simplified" License
      •1•7•8•2•Updated Dec 16, 2025Dec 16, 2025

    • mastodon-collection

      Public
      Java
      •
      BSD 2-Clause "Simplified" License
      •4•3•2•0•Updated Nov 1, 2025Nov 1, 2025

    • mastodon-graph

      Public
      Java
      •
      BSD 2-Clause "Simplified" License
      •2•4•0•0•Updated Oct 5, 2025Oct 5, 2025

    • mastodon-ellipsoid-fitting

      Public
      Java
      •
      BSD 2-Clause "Simplified" License
      •3•2•3•0•Updated Sep 16, 2025Sep 16, 2025

    • mastodon-tracking

      Public
      Basic tracking algorithms based on Mastodon data structures.
      Java
      •
      BSD 2-Clause "Simplified" License
      •3•4•4•1•Updated Sep 16, 2025Sep 16, 2025

    • mastodon-blender-view

      Public
      Mastodon 3D View that uses Blender
      Java
      •
      BSD 2-Clause "Simplified" License
      •1•4•11•1•Updated Sep 16, 2025Sep 16, 2025

    • mastodon-tomancak

      Public
      Java
      •
      BSD 2-Clause "Simplified" License
      •5•1•9•4•Updated Sep 16, 2025Sep 16, 2025

    • mastodon-ctc

      Public
      Mastodon plugins to import from and export to (not only) the CellTrackingChallenge format
      Java
      •
      BSD 2-Clause "Simplified" License
      •3•1•7•0•Updated Aug 21, 2025Aug 21, 2025

    • mastodon-benchmark

      Public
      Language and framework for reproducible benchmarking of Mastodon main displays.
      Java
      •
      BSD 2-Clause "Simplified" License
      •0•0•0•0•Updated Aug 14, 2025Aug 14, 2025

    • mastodon-simulator

      Public
      Cell population growth simulator implemented in Mastodon.
      Java
      •
      BSD 2-Clause "Simplified" License
      •0•1•3•0•Updated Aug 4, 2025Aug 4, 2025

    • bigdataviewer-core

      Public
      For Mastodon-Benchmark only: ImgLib2-based viewer for registered SPIM stacks and more
      Java
      •
      BSD 2-Clause "Simplified" License
      •39•0•0•0•Updated Aug 4, 2025Aug 4, 2025

    • mastodon-geff

      Public
      Geff I/O for Mastodon
      0•0•0•0•Updated Jul 18, 2025Jul 18, 2025

    • mastodon-averoflab

      Public
      Java
      •
      BSD 2-Clause "Simplified" License
      •0•0•0•0•Updated Apr 6, 2025Apr 6, 2025

    • mastodon-plugin-example

      Public
      Template / example to get you started writing your own Mastodon plugin or extension.
      Java
      •
      BSD 2-Clause "Simplified" License
      •0•1•0•0•Updated Jan 26, 2025Jan 26, 2025

    • mastodon-app

      Public
      Java
      •
      BSD 2-Clause "Simplified" License
      •2•0•0•0•Updated Jan 26, 2025Jan 26, 2025

    • .github

      Public
      Public organization profile for the Mastodon-SC organization.
      2•0•0•0•Updated Jan 17, 2025Jan 17, 2025

    • mastodon-pasteur

      Public
      Mastodon plugins developed in the context of Pasteur users projects.
      Java
      •
      BSD 2-Clause "Simplified" License
      •2•2•0•0•Updated Jan 17, 2025Jan 17, 2025

    • mastodon-selection-creator

      Public
      A selection creator UI for Mastodon, as a Mastodon plugin.
      Java
      •
      BSD 2-Clause "Simplified" License
      •2•0•2•0•Updated Jan 17, 2025Jan 17, 2025

    • mastodon-sciview

      Public archive
      A bridge between Mastodon and sciview
      Java
      •
      BSD 2-Clause "Simplified" License
      •0•0•7•0•Updated Oct 11, 2024Oct 11, 2024

    • mastodon-collaborative

      Public archive
      Mastodon plugins to foster collaborative annotations
      Java
      •
      BSD 2-Clause "Simplified" License
      •1•0•10•0•Updated Oct 11, 2024Oct 11, 2024

    • mastodon-git

      Public
      A plugin for Mastodon that allows to collaborate on a project via Git.
      Java
      •
      BSD 2-Clause "Simplified" License
      •0•0•15•1•Updated Oct 10, 2024Oct 10, 2024

    • mastodon-example-data

      Public
      2•1•0•0•Updated Oct 2, 2024Oct 2, 2024

    • mastodon-grapher-opengl

      Public
      Java
      •1•1•2•1•Updated Sep 24, 2024Sep 24, 2024

    • mastodon-ext-viewers

      Public
      Tracking data transfers from Mastodon to various viewers (e.g., sciview or Blender)
      Java
      •
      BSD 2-Clause "Simplified" License
      •1•0•0•2•Updated Jul 18, 2024Jul 18, 2024

    • python-mastodon-importer

      Public
      Python
      •
      BSD 3-Clause "New" or "Revised" License
      •3•4•1•0•Updated Mar 20, 2024Mar 20, 2024

    • mastodon-deploy-scripts

      Public
      Utility scripts to build, release and deploy Mastodon as an application.
      Python
      •
      BSD 2-Clause "Simplified" License
      •0•0•0•0•Updated Nov 10, 2022Nov 10, 2022

    • matlab-mastodon-importer

      Public
      A MATLAB importer for Mastodon files.
      MATLAB
      •
      BSD 3-Clause "New" or "Revised" License
      •1•2•0•0•Updated Aug 19, 2022Aug 19, 2022

    • mastodon-epicure

      Public
      Toying with extending mastodon core for another application.
      Java
      •0•0•0•0•Updated Jul 25, 2021Jul 25, 2021