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    68 repositories

    • brainchop

      Public
      Brainchop: In-browser 3D MRI rendering and segmentation
      javascriptdeep-learningmrimedical-imagingneuroimagingfrontend-appthree-js3d-segmentationtensorflowjsmri-segmentation
      JavaScript
      •
      MIT License
      •60•493•4•1•Updated Dec 18, 2025Dec 18, 2025

    • brainchop-cli

      Public
      Portable and lightweight brain segmentation in the terminal!
      Python
      •
      MIT License
      •3•18•1•0•Updated Dec 17, 2025Dec 17, 2025

    • brainchop-models

      Public
      Shared repository for storing segmentation models for brainchop and brainchop-cli
      Python
      •0•0•0•0•Updated Dec 17, 2025Dec 17, 2025

    • brainchop-test

      Public
      testing webgpu implementation before making it permanent
      JavaScript
      •
      MIT License
      •0•0•0•0•Updated Dec 17, 2025Dec 17, 2025

    • brain-spi

      Public
      Comparison of pairwise statistics for connectivity estimation
      Jupyter Notebook
      •0•0•0•0•Updated Dec 15, 2025Dec 15, 2025

    • gunfolds

      Public
      Tools for working with compressed graphs and solving forward and the inverse problems in undersampling and latent variable cases. The package provides implementation of MSL, RASL, ASP-based, CSP-based, and other algorithms
      Python
      •
      GNU General Public License v3.0
      •1•4•1•2•Updated Dec 3, 2025Dec 3, 2025

    • neuroneural.github.io

      Public
      HTML
      •1•0•0•1•Updated Nov 20, 2025Nov 20, 2025

    • pathtree

      Public
      Marginalizes latent variables in graphical models without losing essential delay (lag) information.
      Python
      •
      GNU General Public License v3.0
      •0•1•0•0•Updated Nov 10, 2025Nov 10, 2025

    • AML

      Public
      Slides and other materials for the advanced machine learning course
      HTML
      •
      MIT License
      •0•2•0•0•Updated Oct 29, 2025Oct 29, 2025

    • trends_scripts

      Public
      Shell
      •0•0•0•0•Updated Oct 19, 2025Oct 19, 2025

    • BrainStorms

      Public
      Python
      •0•1•0•0•Updated Sep 22, 2025Sep 22, 2025

    • DECIFRA

      Public
      Jupyter Notebook
      •
      MIT License
      •1•0•0•0•Updated Sep 18, 2025Sep 18, 2025

    • python-icar

      Public
      Tools for performing group ICA on fMRI data using ICA-Torch
      Python
      •
      MIT License
      •0•3•0•0•Updated Sep 12, 2025Sep 12, 2025

    • meanMLP

      Public
      Code examples for model introspection
      Jupyter Notebook
      •
      MIT License
      •1•8•0•0•Updated Sep 2, 2025Sep 2, 2025

    • undersampling-project

      Public
      Jupyter Notebook
      •1•0•0•0•Updated Aug 15, 2025Aug 15, 2025

    • algorithms

      Public
      Design and analysis of algorithms lecture slides
      HTML
      •
      MIT License
      •0•0•0•0•Updated May 27, 2025May 27, 2025

    • catalyst_example

      Public
      an example of the training file supporting distributed training and curriculum learning with Catalyst
      Python
      •
      MIT License
      •1•0•0•0•Updated Apr 20, 2025Apr 20, 2025

    • wirehead

      Public
      Distributed caching system and wrapper for synthetic data generation
      Python
      •
      MIT License
      •1•3•0•0•Updated Feb 24, 2025Feb 24, 2025

    • catalyst

      Public
      Accelerated deep learning R&D
      Python
      •
      Apache License 2.0
      •396•0•0•0•Updated Feb 23, 2025Feb 23, 2025

    • llm

      Public
      our llm training and inference stack
      0•0•0•0•Updated Feb 13, 2025Feb 13, 2025

    • CSRP-CSRParcellation

      Public
      CSRParcellation is an advanced extension of the CortexODE framework, integrating cutting-edge Graph Neural Networks and CSR deep learning methodologies to revolutionize cortical surface reconstruction for enhanced neuroimaging analysis.
      Python
      •0•1•0•0•Updated Nov 15, 2024Nov 15, 2024

    • polyssifier

      Public
      run a multitude of classifiers on you data and get an AUC report
      Python
      •
      GNU General Public License v2.0
      •23•0•0•0•Updated Aug 30, 2024Aug 30, 2024

    • mindfultensors

      Public
      Dataloader that serves (f)MRI images from key-value databases (mongo and Redis to start with)
      Python
      •
      MIT License
      •1•4•0•1•Updated Aug 13, 2024Aug 13, 2024

    • neuroneuralnets

      Public
      Implementations of neural network architectures
      Python
      •0•1•0•0•Updated Jul 30, 2024Jul 30, 2024

    • BrainPlots

      Public
      Surface reconstruction review analysis at Trends Center
      Jupyter Notebook
      •1•0•0•0•Updated Jul 15, 2024Jul 15, 2024

    • FastSurfer_benchmark

      Public
      Investigating fastsurfer as a benchmark
      Jupyter Notebook
      •
      Apache License 2.0
      •145•0•0•0•Updated Jun 24, 2024Jun 24, 2024

    • nshor_docker

      Public
      Containerized fMRI Preprocessing Pipeline
      Shell
      •1•4•0•0•Updated May 13, 2024May 13, 2024

    • niivue-brainchop

      Public
      Niivue + brainchop demo implementation
      JavaScript
      •
      Other
      •3•0•0•0•Updated Apr 29, 2024Apr 29, 2024

    • Meshnet_Cpp

      Public
      C++
      •0•0•0•0•Updated Apr 22, 2024Apr 22, 2024

    • immunetworkstf

      Public
      HCL
      •0•0•0•0•Updated Apr 10, 2024Apr 10, 2024