Repositories list

• website

  Public
  Workflow4Metabolomics website

  TeX

  •

  GNU General Public License v3.0

  •0•0•0•0•Updated Dec 2, 2025Dec 2, 2025

• W4MRUtils

  Public
  Set of utilitqry functions to help W4M to create tools and their wrappers

  R

  •

  GNU Affero General Public License v3.0

  •0•0•1•0•Updated Nov 12, 2025Nov 12, 2025

• training-material

  Public
  A collection of Galaxy-related training material

  HTML

  •

  MIT License

  •1k•0•0•1•Updated Sep 30, 2025Sep 30, 2025

• tools-metabolomics

  Public
  Galaxy tools for metabolomics maintained by Workflow4Metabolomics

  nmrgalaxymetabolomics+ 7mass-spectrometrygalaxy-projectworkflow4metabolomicsusegalaxygcmslcmsmetabolomics-pipeline

  R

  •

  GNU General Public License v3.0

  •29•30•80•28•Updated Sep 12, 2025Sep 12, 2025

• galaxy_codex

  Public
  Galaxy Communities Dock aka Galaxy Codex: catalog of Galaxy resources (tools, training, workflows)

  HTML

  •

  MIT License

  •33•0•0•0•Updated Jul 30, 2025Jul 30, 2025

• checkformat

  Public
  Checks the formats of the dataMatrix, sampleMetadata, and variableMetadata files

  R

  •

  Other

  •0•0•0•0•Updated Jul 10, 2025Jul 10, 2025

• tool-table_merge

  Public
  This tool allows to merge the data matrix with one metadata table.

  R

  •0•0•0•0•Updated Jul 9, 2025Jul 9, 2025

• tool-generic_filter

  Public
  This tool allows to remove all samples and/or variables corresponding to specific values regarding designated factors or numerical variables, in datasets corresponding to dataMatrix, sampleMetadata and variableMetadata.

  R

  •0•0•1•0•Updated Jul 9, 2025Jul 9, 2025

• workflow4metabolomics

  Public
  Workflow4Metabolomics meta repository

  nmrmetabolomicslc-ms+ 3galaxy-projectworkflow4metabolomicsusegalaxy

  HTML

  •

  GNU General Public License v3.0

  •4•11•14•1•Updated May 23, 2025May 23, 2025

• metaMS

  Public archive
  Move to https://github.com/workflow4metabolomics/tools-metabolomics

  workflow4metabolomicsgcmsmetabolo

  R

  •2•2•25•1•Updated May 21, 2025May 21, 2025

• qualitymetrics

  Public
  Metrics and graphics to check the quality of the data

  R

  •2•0•1•0•Updated May 16, 2025May 16, 2025

• lcmsmatching

  Public
  Shell

  •1•1•9•0•Updated Jul 20, 2024Jul 20, 2024

• tool-bank-hmdb

  Public
  HMDB MS search search by masses on HMDB online bank

  Perl

  •0•0•1•0•Updated Jun 10, 2024Jun 10, 2024

• Workflow4Experimenters

  Public
  Annual W4M training sessions

  HTML

  •0•0•0•0•Updated Jan 8, 2024Jan 8, 2024

• iwc

  Public
  Galaxy Workflows maintained by the Intergalactic Workflow Commission

  Python

  •84•0•0•0•Updated Nov 24, 2023Nov 24, 2023

• gxit-rstudio-metabolomics

  Public
  Galaxy Interactive tool with rstudio

  Dockerfile

  •

  MIT License

  •0•0•1•0•Updated Jun 18, 2023Jun 18, 2023

• galaxy

  Public
  Data intensive science for everyone.

  Python

  •

  Other

  •1.1k•0•0•0•Updated Dec 19, 2022Dec 19, 2022

• anova

  Public
  Anova for Galaxy

  R

  •1•1•4•1•Updated Oct 3, 2022Oct 3, 2022

• isa2w4m

  Public
  Makefile

  •1•2•4•0•Updated Apr 27, 2022Apr 27, 2022

• easyrlibrary-lib

  Public
  Useful functions to make R script coding easier.

  R

  •0•0•1•0•Updated Nov 4, 2021Nov 4, 2021

• gxit-nmrpro

  Public
  1D and 2D NMR viewer integrated as a GXIT in Galaxy

  Python

  •0•0•0•0•Updated Jun 10, 2021Jun 10, 2021

• mtbls-dwnld

  Public
  Shell

  •2•4•3•0•Updated Mar 20, 2021Mar 20, 2021

• batch_correction

  Public
  Correction for signal drift and batch effects

  R

  •1•1•1•0•Updated Jan 14, 2021Jan 14, 2021

• gxit-shiny-heatmap

  Public
  Galaxy Interactive Environment to display heatmap.

  R

  •0•0•1•0•Updated Jan 6, 2021Jan 6, 2021

• correlation_analysis

  Public archive
  🚫 move to https://github.com/workflow4metabolomics/tools-metabolomics

  R

  •

  GNU General Public License v3.0

  •0•2•1•0•Updated Dec 8, 2020Dec 8, 2020

• mixmodel4repeated_measures

  Public archive
  🚫 move to https://github.com/workflow4metabolomics/tools-metabolomics

  R

  •0•2•0•0•Updated Sep 21, 2020Sep 21, 2020

• nmr_annotation2d

  Public archive
  🚫 move to https://github.com/workflow4metabolomics/tools-metabolomics

  R

  •1•2•0•0•Updated Feb 4, 2020Feb 4, 2020

• isa-extractor

  Public
  Shell

  •1•1•7•0•Updated Jan 8, 2020Jan 8, 2020

• msPurity

  Public
  Automated Evaluation of Precursor Ion Purity for Mass Spectrometry Based Fragmentation in Metabolomics

  R

  •4•0•0•0•Updated Dec 6, 2019Dec 6, 2019

• mspurity-galaxy

  Public
  Galaxy tools for msPurity package: includes precursor ion purity calculations and spectral matching

  R

  •

  GNU General Public License v3.0

  •6•0•0•0•Updated Dec 5, 2019Dec 5, 2019