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@wtsi-hgi Wellcome Trust Sanger Institute - Human Genetics Informatics

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    433 repositories

    • spack-repo

      Public
      Spack Package Repository
      Python
      •
      MIT License
      •6•3•0•1•Updated Dec 23, 2025Dec 23, 2025

    • softpack-core

      Public
      SoftPack Core
      Python
      •
      MIT License
      •0•0•1•1•Updated Dec 23, 2025Dec 23, 2025

    • wrstat-ui

      Public
      Go
      •
      MIT License
      •0•0•0•1•Updated Dec 22, 2025Dec 22, 2025

    • MoCHI

      Public
      Neural networks to fit interpretable models and quantify energies, energetic couplings, epistasis, and allostery from deep mutational scanning data
      Python
      •
      MIT License
      •6•0•0•0•Updated Dec 22, 2025Dec 22, 2025

    • backup-plans

      Public
      Go
      •0•0•0•5•Updated Dec 21, 2025Dec 21, 2025

    • ibackup

      Public
      Performant backups of many files to iRODS
      Go
      •
      MIT License
      •0•0•0•5•Updated Dec 19, 2025Dec 19, 2025

    • go-softpack-builder

      Public
      Go implementation of a softpack builder service
      Go
      •
      MIT License
      •0•0•0•0•Updated Dec 19, 2025Dec 19, 2025

    • sc_analysis

      Public
      scripts for single cell multiome analysis
      R
      •
      MIT License
      •0•0•0•0•Updated Dec 18, 2025Dec 18, 2025

    • softpack-builder

      Public
      SoftPack Builder provides services for building SoftPack environments
      Python
      •
      MIT License
      •0•0•1•18•Updated Dec 17, 2025Dec 17, 2025

    • llm-knowledge-base

      Public
      playing with llms
      TypeScript
      •
      MIT License
      •0•0•0•0•Updated Dec 9, 2025Dec 9, 2025

    • go-authserver

      Public
      A library to easily create an authenticated web server in Go
      Go
      •
      MIT License
      •0•0•0•0•Updated Dec 2, 2025Dec 2, 2025

    • gst

      Public
      GenGen Sample Tracker
      Go
      •
      MIT License
      •0•0•0•1•Updated Nov 25, 2025Nov 25, 2025

    • rna_seq

      Public
      Nextflow
      •
      GNU General Public License v3.0
      •2•0•1•0•Updated Nov 24, 2025Nov 24, 2025

    • QTLight

      Public
      eqtl analysis pipeline using tensorqtl, saige-qtl, LIMIX, quasar and jaxQTL
      Python
      •
      GNU General Public License v3.0
      •9•14•0•0•Updated Nov 21, 2025Nov 21, 2025

    • Flanders

      Public
      The fork of the Flanders pipeline. To develop and test new fucntionality required by Sanger scientific teams. We consider merging all changes to upstream after implementation and testing.
      R
      •3•0•0•0•Updated Nov 20, 2025Nov 20, 2025

    • mercuryrc

      Public
      Shell
      •
      GNU General Public License v3.0
      •0•1•0•0•Updated Nov 18, 2025Nov 18, 2025

    • yascp

      Public
      scRNA multimodal analysis pipeline utilised for large dataset processing - capable in handeling scRNA, scATAC, Hastag Multiplexed samples
      scrna-seq-analysis
      Python
      •
      GNU General Public License v3.0
      •8•15•0•0•Updated Nov 17, 2025Nov 17, 2025

    • wxs-qc

      Public
      Quality control pipeline for human exome/genome cohorts
      Python
      •
      Other
      •0•4•0•0•Updated Nov 17, 2025Nov 17, 2025

    • wtsi-hgi.github.io

      Public
      Github webpage for HGI projects
      HTML
      •0•0•0•0•Updated Nov 17, 2025Nov 17, 2025

    • osdataproc

      Public
      osdataproc is a command-line tool for creating an OpenStack cluster with Apache Spark and Apache Hadoop configured. It comes with JupyterLab and Hail, a genomic data analysis library built on Spark installed, as well as Netdata for monitoring.
      Jinja
      •
      Other
      •3•0•0•0•Updated Nov 10, 2025Nov 10, 2025

    • softpack-docs

      Public
      SoftPack Documentation
      JavaScript
      •0•0•5•21•Updated Nov 10, 2025Nov 10, 2025

    • statter

      Public
      Go
      •0•0•0•0•Updated Nov 6, 2025Nov 6, 2025

    • nf_splicing

      Public
      A nextflow pipeline of identifying and quantifying splicing events
      Python
      •
      MIT License
      •1•0•0•0•Updated Nov 3, 2025Nov 3, 2025

    • softpack-web

      Public
      Softpack Web provides a graphical user interface for Softpack services.
      reactgraphql
      TypeScript
      •
      MIT License
      •0•0•5•2•Updated Oct 22, 2025Oct 22, 2025

    • nf_vep_annotation

      Public
      Run VEP and extract variant annotations
      Nextflow
      •
      GNU General Public License v3.0
      •1•0•0•0•Updated Oct 16, 2025Oct 16, 2025

    • softpack-mcp

      Public
      FastAPI-based MCP server for connecting softpack spack building commands to external services and LLMs
      Python
      •0•0•0•0•Updated Oct 13, 2025Oct 13, 2025

    • SSDV

      Public
      JavaScript
      •3•2•0•0•Updated Oct 1, 2025Oct 1, 2025

    • sarek

      Public
      Nextflow
      •
      MIT License
      •3•0•0•1•Updated Sep 24, 2025Sep 24, 2025

    • backup-plan-ui

      Public
      A web-based user interface for managing backup plans. This application allows users to view, add, edit, and delete backup plan entries stored in a CSV file, SQLite or MySQL database..
      Go
      •
      MIT License
      •0•0•0•0•Updated Sep 22, 2025Sep 22, 2025

    • nf_tower_irods_to_lustre

      Public
      Nextflow
      •
      GNU General Public License v3.0
      •1•1•1•0•Updated Sep 19, 2025Sep 19, 2025