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    354 repositories

    • kotobuki

      Public
      Update Usagi mappings with kotobuki
      pythonetlohdsiomopusagiomop-cdm
      Python
      •
      Apache License 2.0
      •0•3•2•1•Updated Dec 17, 2025Dec 17, 2025

    • ot-ui-apps

      Public
      TypeScript
      •
      Apache License 2.0
      •17•1•0•19•Updated Dec 16, 2025Dec 16, 2025

    • omop-cdm

      Public
      SQLAlchemy definition of the OHDSI OMOP CDM
      Python
      •
      Apache License 2.0
      •0•4•0•1•Updated Dec 15, 2025Dec 15, 2025

    • platform-api

      Public
      GraphQL and Rest API rewrite of the current Open Targets platform API
      Scala
      •
      Apache License 2.0
      •8•0•0•0•Updated Dec 15, 2025Dec 15, 2025

    • fair-package-registry

      Public
      FAIR Package Registry PoC by the Dutch Health Care Institute and The Hyve
      Python
      •0•0•0•0•Updated Dec 12, 2025Dec 12, 2025

    • opentargets-mcp

      Public
      MCP server for Open Targets Data
      Python
      •
      MIT License
      •8•0•0•0•Updated Dec 10, 2025Dec 10, 2025

    • OHDSI-WhiteRabbit

      Public
      WhiteRabbit is a small application that can be used to analyse the structure and contents of a database as preparation for designing an ETL. It comes with RabbitInAHat, an application for interactive design of an ETL to the OMOP Common Data Model with the help of the the scan report generated by White Rabbit.
      Java
      •
      Apache License 2.0
      •96•0•0•3•Updated Dec 2, 2025Dec 2, 2025

    • w3id.org

      Public
      Website source code for w3id.org.
      HTML
      •1.5k•0•0•0•Updated Dec 2, 2025Dec 2, 2025

    • react-json-to-table

      Public
      react-json-to-table
      TypeScript
      •
      GNU General Public License v3.0
      •30•38•14•7•Updated Nov 18, 2025Nov 18, 2025

    • v6-omop-cohort-diagnostics

      Public
      Python
      •
      MIT License
      •1•0•0•1•Updated Nov 5, 2025Nov 5, 2025

    • vulnerability-scanning

      Public
      GitHub action to report vulnerabilities as issues
      MIT License
      •0•0•1•0•Updated Oct 27, 2025Oct 27, 2025

    • BioCypher-OT

      Public
      Python
      •
      MIT License
      •6•2•0•0•Updated Oct 2, 2025Oct 2, 2025

    • ot-ai-api

      Public
      JavaScript
      •
      Apache License 2.0
      •1•0•0•1•Updated Sep 30, 2025Sep 30, 2025

    • biochatter

      Public
      Backend library for conversational AI in biomedicine
      Jupyter Notebook
      •
      MIT License
      •55•0•0•1•Updated Sep 3, 2025Sep 3, 2025

    • cbioportal-frontend

      Public
      React Frontend of cBioPortal 🎉
      TypeScript
      •
      GNU Affero General Public License v3.0
      •353•0•0•15•Updated Sep 1, 2025Sep 1, 2025

    • fairspace

      Public
      Fairspace provides a secure environment for managing research data.
      metadatardfwebdavfairresearch-datafairspace
      JavaScript
      •
      Apache License 2.0
      •6•14•0•4•Updated Aug 13, 2025Aug 13, 2025

    • biochatter-server

      Public
      Flask server for BioChatter integration into web apps
      Python
      •
      MIT License
      •10•0•0•0•Updated Aug 5, 2025Aug 5, 2025

    • OHDSI-Usagi

      Public
      Usagi is an application to help create mappings between coding systems and the Vocabulary standard concepts.
      Java
      •34•0•0•0•Updated Jul 24, 2025Jul 24, 2025

    • v6-basic-omop-queries

      Public
      vantage6
      Python
      •
      MIT License
      •2•0•0•0•Updated May 8, 2025May 8, 2025

    • synthetic-breast-cancer-OMOP-database

      Public
      OMOP database for IKNL synthetic breast cancer dataset
      PLpgSQL
      •3•0•0•0•Updated May 4, 2025May 4, 2025

    • genetics-pipe

      Public
      Scala
      •
      Apache License 2.0
      •2•0•0•0•Updated Apr 30, 2025Apr 30, 2025

    • cbioportal

      Public
      cBioPortal topic branches at The Hyve
      cbioportal
      Java
      •
      GNU Affero General Public License v3.0
      •768•3•0•0•Updated Apr 10, 2025Apr 10, 2025

    • report-vulnerability-image

      Public
      Python
      •
      MIT License
      •0•0•0•0•Updated Apr 7, 2025Apr 7, 2025

    • report-vulnerability

      Public
      Github action for reporting a vulnerability
      MIT License
      •0•0•0•0•Updated Apr 7, 2025Apr 7, 2025

    • gentropy

      Public
      Open Targets python framework for post-GWAS analysis
      Jupyter Notebook
      •
      Apache License 2.0
      •15•0•1•3•Updated Apr 3, 2025Apr 3, 2025

    • biocypher

      Public
      A unifying framework for biomedical research knowledge graphs
      Python
      •
      MIT License
      •43•1•0•8•Updated Apr 2, 2025Apr 2, 2025

    • vantage6

      Public
      The main vantage6 repository: code for the central server, nodes, CLI and Python Client
      Python
      •
      Apache License 2.0
      •17•0•0•0•Updated Apr 1, 2025Apr 1, 2025

    • genetics-v2g-data

      Public
      Workflows to generate cis-regulatory datasets used for variant-to-gene (V2G) assignment in Open Targets Genetics
      Python
      •
      Apache License 2.0
      •8•0•0•0•Updated Mar 31, 2025Mar 31, 2025

    • OnToma

      Public
      Map your disease and phenotype terms to the Open Targets platform ontology
      Python
      •
      Other
      •6•0•0•8•Updated Mar 10, 2025Mar 10, 2025

    • Capr-PLUS

      Public
      Cohort definition Application Programming in R fork for PHEMS project
      R
      •
      Apache License 2.0
      •17•0•0•1•Updated Mar 6, 2025Mar 6, 2025