Repositories list

• kotobuki

  Public

  thehyve/kotobuki’s past year of commit activity
  Update Usagi mappings with kotobuki

  pythonetlohdsi+ 3omopusagiomop-cdm

  Python

  •

  Apache License 2.0

  •0•3•2•1•Updated Dec 17, 2025Dec 17, 2025

• ot-ui-apps

  Public
  TypeScript

  •

  Apache License 2.0

  •17•1•0•19•Updated Dec 16, 2025Dec 16, 2025

• omop-cdm

  Public

  thehyve/omop-cdm’s past year of commit activity
  SQLAlchemy definition of the OHDSI OMOP CDM

  Python

  •

  Apache License 2.0

  •0•4•0•1•Updated Dec 15, 2025Dec 15, 2025

• platform-api

  Public

  thehyve/platform-api’s past year of commit activity
  GraphQL and Rest API rewrite of the current Open Targets platform API

  Scala

  •

  Apache License 2.0

  •8•0•0•0•Updated Dec 15, 2025Dec 15, 2025

• fair-package-registry

  Public
  FAIR Package Registry PoC by the Dutch Health Care Institute and The Hyve

  Python

  •0•0•0•0•Updated Dec 12, 2025Dec 12, 2025

• opentargets-mcp

  Public
  MCP server for Open Targets Data

  Python

  •

  MIT License

  •8•0•0•0•Updated Dec 10, 2025Dec 10, 2025

• OHDSI-WhiteRabbit

  Public
  WhiteRabbit is a small application that can be used to analyse the structure and contents of a database as preparation for designing an ETL. It comes with RabbitInAHat, an application for interactive design of an ETL to the OMOP Common Data Model with the help of the the scan report generated by White Rabbit.

  Java

  •

  Apache License 2.0

  •96•0•0•3•Updated Dec 2, 2025Dec 2, 2025

• w3id.org

  Public

  thehyve/w3id.org’s past year of commit activity
  Website source code for w3id.org.

  HTML

  •1.5k•0•0•0•Updated Dec 2, 2025Dec 2, 2025

• react-json-to-table

  Public

  thehyve/react-json-to-table’s past year of commit activity
  react-json-to-table

  TypeScript

  •

  GNU General Public License v3.0

  •30•38•14•7•Updated Nov 18, 2025Nov 18, 2025

• v6-omop-cohort-diagnostics

  Public

  thehyve/v6-omop-cohort-diagnostics’s past year of commit activity
  Python

  •

  MIT License

  •1•0•0•1•Updated Nov 5, 2025Nov 5, 2025

• vulnerability-scanning

  Public

  thehyve/vulnerability-scanning’s past year of commit activity
  GitHub action to report vulnerabilities as issues

  MIT License

  •0•0•1•0•Updated Oct 27, 2025Oct 27, 2025

• BioCypher-OT

  Public

  thehyve/BioCypher-OT’s past year of commit activity
  Python

  •

  MIT License

  •6•2•0•0•Updated Oct 2, 2025Oct 2, 2025

• ot-ai-api

  Public

  thehyve/ot-ai-api’s past year of commit activity
  JavaScript

  •

  Apache License 2.0

  •1•0•0•1•Updated Sep 30, 2025Sep 30, 2025

• biochatter

  Public

  thehyve/biochatter’s past year of commit activity
  Backend library for conversational AI in biomedicine

  Jupyter Notebook

  •

  MIT License

  •55•0•0•1•Updated Sep 3, 2025Sep 3, 2025

• cbioportal-frontend

  Public

  thehyve/cbioportal-frontend’s past year of commit activity
  React Frontend of cBioPortal 🎉

  TypeScript

  •

  GNU Affero General Public License v3.0

  •353•0•0•15•Updated Sep 1, 2025Sep 1, 2025

• fairspace

  Public
  Fairspace provides a secure environment for managing research data.

  metadatardfwebdav+ 3fairresearch-datafairspace

  JavaScript

  •

  Apache License 2.0

  •6•14•0•4•Updated Aug 13, 2025Aug 13, 2025

• biochatter-server

  Public

  thehyve/biochatter-server’s past year of commit activity
  Flask server for BioChatter integration into web apps

  Python

  •

  MIT License

  •10•0•0•0•Updated Aug 5, 2025Aug 5, 2025

• OHDSI-Usagi

  Public

  thehyve/OHDSI-Usagi’s past year of commit activity
  Usagi is an application to help create mappings between coding systems and the Vocabulary standard concepts.

  Java

  •34•0•0•0•Updated Jul 24, 2025Jul 24, 2025

• v6-basic-omop-queries

  Public
  vantage6

  Python

  •

  MIT License

  •2•0•0•0•Updated May 8, 2025May 8, 2025

• synthetic-breast-cancer-OMOP-database

  Public
  OMOP database for IKNL synthetic breast cancer dataset

  PLpgSQL

  •3•0•0•0•Updated May 4, 2025May 4, 2025

• genetics-pipe

  Public
  Scala

  •

  Apache License 2.0

  •2•0•0•0•Updated Apr 30, 2025Apr 30, 2025

• cbioportal

  Public

  thehyve/cbioportal’s past year of commit activity
  cBioPortal topic branches at The Hyve

  cbioportal

  Java

  •

  GNU Affero General Public License v3.0

  •768•3•0•0•Updated Apr 10, 2025Apr 10, 2025

• report-vulnerability-image

  Public

  thehyve/report-vulnerability-image’s past year of commit activity
  Python

  •

  MIT License

  •0•0•0•0•Updated Apr 7, 2025Apr 7, 2025

• report-vulnerability

  Public

  thehyve/report-vulnerability’s past year of commit activity
  Github action for reporting a vulnerability

  MIT License

  •0•0•0•0•Updated Apr 7, 2025Apr 7, 2025

• gentropy

  Public

  thehyve/gentropy’s past year of commit activity
  Open Targets python framework for post-GWAS analysis

  Jupyter Notebook

  •

  Apache License 2.0

  •15•0•1•3•Updated Apr 3, 2025Apr 3, 2025

• biocypher

  Public
  A unifying framework for biomedical research knowledge graphs

  Python

  •

  MIT License

  •43•1•0•8•Updated Apr 2, 2025Apr 2, 2025

• vantage6

  Public

  thehyve/vantage6’s past year of commit activity
  The main vantage6 repository: code for the central server, nodes, CLI and Python Client

  Python

  •

  Apache License 2.0

  •17•0•0•0•Updated Apr 1, 2025Apr 1, 2025

• genetics-v2g-data

  Public
  Workflows to generate cis-regulatory datasets used for variant-to-gene (V2G) assignment in Open Targets Genetics

  Python

  •

  Apache License 2.0

  •8•0•0•0•Updated Mar 31, 2025Mar 31, 2025

• OnToma

  Public
  Map your disease and phenotype terms to the Open Targets platform ontology

  Python

  •

  Other

  •6•0•0•8•Updated Mar 10, 2025Mar 10, 2025

• Capr-PLUS

  Public
  Cohort definition Application Programming in R fork for PHEMS project

  R

  •

  Apache License 2.0

  •17•0•0•1•Updated Mar 6, 2025Mar 6, 2025