A genome visualization python package for comparative genomics

Circular visualization in Python (Circos Plot, Chord Diagram, Radar Chart)

python Circos

Sainfoin Trait Ontology

RepeatIdentifier

Make colorful identity heatmaps of genomic sequence

This is the standalone version of the EviAnn pipeline

C-Phasing/CPhasing: Phasing and scaffolding polyploid genomes based on 3C-based data (Pore-C, CiFi, Hi-C, Omni-C).

In-memory nucleotide sequence k-mer counting, filtering, graph traversal and more

A organelle de novo genome assembly toolkit

a Bioinformatics Application for Navigating De novo Assembly Graphs Easily

LVgs is a HiFi-based strategy for estimating the Genome Size robustly by plotting iteration of the large-scale forecasts through gradient ascent of K-mer length and searching the Limiting Value.

Whole Genome Alignment Tools

A framework for training graph neural networks to untangle assembly graphs obtained from OLC-based de novo genome assemblers.

A list of software for pangenomics

A node-based image processing GUI aimed at making chaining image processing tasks easy and customizable. Born as an AI upscaling application, chaiNNer has grown into an extremely flexible and power…