Hi,

I'm running into an error when calling the log_reg_case.out program.

$ $hawkDir/log_reg_case.out -t $noThread $sex_confounder_arg -p $noPC > pvals_case_top.txt
terminate called after throwing an instance of 'alglib::ap_error'
Aborted

the values of the variables set above are: noThread=1, noPC=2, and sex_confounder_arg is not set.

The number of lines in the (truncated) output is much less than those in the original sorted files:

$ wc -l pvals_case_top.txt
790000 pvals_case_top.txt
$ wc -l case_out_w_bonf_top.kmerDiff
107759269 case_out_w_bonf_top.kmerDiff

Any ideas on how to fix this?
Many thanks,
Pedro