Hi again,

Once I worked through the previous issues with my test data, I ramped up to run a full analysis on 266 samples (140 case and 126 controls). Everything was running smoothly and it produced all expected output (including significant hits this time!), but I was printing stdout/stderr to a file and discovered the following in that file:

terminate called after throwing an instance of 'alglib::ap_error'
./runHawk: line 53: 33265 Aborted                 (core dumped) $hawkDir/log_reg_case.out -t $noThread $sex_confounder_arg -p $noPC > pvals_case_top.txt
terminate called after throwing an instance of 'alglib::ap_error'
./runHawk: line 53: 35031 Aborted                 (core dumped) $hawkDir/log_reg_control.out -t $noThread $sex_confounder_arg -p $noPC > pvals_control_top.txt

As I said, all expected output files were generated regardless of this error, but I'm concerned that those results might not be trustworthy if something failed during the run. Can you provide any insight on this?

I'm running on a Linux machine with 64 CPUs and 252 Gb and running the exact same code that previously worked (without error) for my ~20 sample test dataset. I haven't modified anything for threading and according to htop it looks like HAWK is running on 16 threads by default on this system.

Thanks!