Utility scripts related to the manuscript:
Yeguang Hu, Daniela Salgado Figueroa et al., A multiscale 3D chromatin architecture that controls development of the humoral immune system is assembled by IKAROS.
Here is the link of various utility scripts used in the paper:
https://github.com/ay-lab/3D-IKAROS/tree/main/Aggregate_Peak_Analysis
https://github.com/ay-lab/3D-IKAROS/tree/main/Aggregate_Region_Analysis
https://github.com/ay-lab/3D-IKAROS/tree/main/PES_Annotation
https://github.com/ay-lab/3D-IKAROS/tree/main/Peaks_Loops_Overlap
https://github.com/ay-lab/3D-IKAROS/tree/main/Genes_Loops_Overlap
https://github.com/ay-lab/3D-IKAROS/tree/main/TAD_calling
Identification of compartmental domains, intercompartmental interactions and compartmental changes at anchors
https://github.com/ay-lab/3D-IKAROS/tree/main/Compartment_Domains
https://github.com/ay-lab/3D-IKAROS/tree/main/Compartment_Score_Change
https://github.com/ay-lab/3D-IKAROS/tree/main/Time_Course_Analysis
https://github.com/ay-lab/3D-IKAROS/tree/main/Anchor_Redirection