Blender AddOn for cellular meshes derived from light microscopy

a tool for using surfaces to explore volumetric data in napari

A tool for creating and analyzing panoramic views of biological membranes in electron tomograms.

Deep-learning library for image restoration.

OpenVDB - Sparse volume data structure and tools

Create and execute VTK pipelines in Blender Node Editor

Extract features from large images and cluster in blocks, independently.

A Python toolbox for registering / fusing / stitching large multi-view / multi-positioning image datasets in 2-3D.

Ultra-fast spatial proteomics OME-Zarr viewer built in Rust.

Daily builds for bpy as a python module.

Blender extension to add CSV files

Blender addon for simulating raw datasets under known evolutionary models

Transformer And Rapid Dimensionless Instance Segmentation

Deep learning based spot detection for FISH images.

Build node trees in Blender more elegantly with code

Segment Anything for Microscopy

Yet Another Ome-ZARR Schema❗️

This is the development home of the workflow management system Snakemake. For general information, see

BlenderNC is a blender addon to visualize scientific gridded data. Read more about BlenderNC at:

Java implementation of Appose ☕

Reference implementation of the Graph Exchange File Format

A Python script that converts BigDataViewer HDF5 files into a list of sparse OpenVDB files.

Goo is a Blender library for modeling biological cells, tissues, and embryos

ShapeEmbed: a self-supervised representation learning framework for 2D shape analysis

ShapeEmbedLite: a lightweight self-supervised representation learning model for 2D shape analysis

Light microscopy simulation in python.

A set of data-oriented wrappers around the python API of Blender.

Read and write TIFF files.

The Material Point Method (MPM) in Blender!