Call CNVs based on read-depth signal. This is a work in progress and not fit for public consumption.

CNVTk should work on any standard 64 bit Linux environment with

• python version >= 2.7

and the following python libraries:

• pysam
• numpy
• sklearn
• pandas
• statsmodels

and the following R libraries

• ggplot2
• grid
• gridExtra
• DNAcopy

It is also dependent on the following submodules

• htslib