Stars
marimo + pixi starter template
A template repo used to make new napari plugins
A napari plugin for interactive Segment Anything Model 3 (SAM3) segmentation using text, points, boxes, exemplar prompts, point-based refinement, and 3D/video-like propagation
Learn it. Build it. Ship it for others.
Library for multiscale visualization of high-resolution multiplexed bioimaging data on the web. Directly renders Zarr and OME-TIFF.
Python package for making UMAP interpretable with exact feature contributions
Resume builder for academics and engineers
Playground to check out OME-ZARR related top
Automated batch processing of cell and tissue microscopy image data in Napari
😎 A curated list of awesome GitHub Profile which updates in real time
Use claude-code for free in the terminal, VSCode extension or discord like OpenClaw (voice supported)
"Deep Learning Crash Course" is a comprehensive and up-to-date guide that takes you from simple neural networks all the way to cutting-edge deep learning architectures-no advanced math and programm…
A Python-based tool for parallelized conversion of image datasets from various formats to OME-Zarr, with support for distributed processing and multi-dimensional concatenation.
SegBio is a complete system for segmenting and separating long, narrow, bendy objects like C. elegans worms
[CVPR 2026 Oral] "INSID3: Training-Free In-Context Segmentation with DINOv3"
Spanish legislation as a Git repo — every law is a Markdown file, every reform a commit. 8,600+ laws.
Segmentation of nuclear signals in fluorescently stained mouse brain tissue sections. Segmentations performed with a fine-tuned Stardist 3D model and/or Cellpose
From Jupyter Notebook to Desktop App in One Click
A companion to CMU professor Zico Kolter's Intro to Modern AI. Learn the basics of machine learning, then train your own LLM from scratch.
Workshop introducing students to bioimage analysis using Napari as an example.
Containerize your Pixi workspace with a single command!
Scientific image analysis resources and software tools.
Morphological features from images and masks made easy.
Diagnose and Fix CUDA / GPU environments compatibility issues locally, in Docker, and CI/CD. CLI + MCP server available.
A collection of Python Jupyter Notebooks with Generative Artificial Intelligence related contents
Master programming by recreating your favorite technologies from scratch.