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seaborn_extensions Public
My collection of general ploting functions that I build on top of seaborn.
Python Other UpdatedFeb 19, 2025 -
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Zed-Monokai-Theme Public
Forked from epmoyer/Zed-Monokai-ThemeA Monokai Syntax Highlighting Theme for the Zed Code Editor
Python Other UpdatedJan 9, 2025 -
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nanodl Public
Forked from HenryNdubuaku/nanodlA Jax-based library for designing and training transformer models from scratch.
Python MIT License UpdatedMar 12, 2024 -
env Public
My work environment: dockerfiles, dotfiles, ipython configs and ways to get static files
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pyaging Public
Forked from rsinghlab/pyagingA Python-based compendium of GPU-optimized aging clocks.
Jupyter Notebook BSD 3-Clause "New" or "Revised" License UpdatedJan 3, 2024 -
sc_MTOP Public
Forked from fuscc-deep-path/sc_MTOPsc-MTOP is an analysis framework based on deep learning and computational pathology. This framework aims to characterize the tumor ecosystem diversity at the single-cell level. This code provide 1)…
Python UpdatedNov 13, 2023 -
astir Public
Forked from camlab-bioml/astirastir | Automated cell identity from single-cell multiplexed imaging and proteomics 🖥🔬✨
Python GNU General Public License v2.0 UpdatedMay 10, 2023 -
toolkit Public
A toolkit for NGS analysis with Python
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clip-retrieval Public
Forked from rom1504/clip-retrievalEasily compute clip embeddings and build a clip retrieval system with them
Jupyter Notebook MIT License UpdatedDec 27, 2022 -
divideAndSlurm Public
Map-reduce style submission of jobs to a Slurm cluster.
Python GNU General Public License v3.0 UpdatedSep 5, 2022 -
anndata Public
Forked from scverse/anndataAnnotated data.
Python BSD 3-Clause "New" or "Revised" License UpdatedJul 6, 2022 -
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PubChemPy Public
Forked from mcs07/PubChemPyPython wrapper for the PubChem PUG REST API.
Python MIT License UpdatedJan 10, 2022 -
urlpath Public
Forked from brandonschabell/urlpathObject-oriented URL from `urllib.parse` and `pathlib`
Python UpdatedNov 12, 2021 -
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page-enrichment Public
Parametric Analysis of Gene Set Enrichment (PAGE) - Python implementation
Python GNU General Public License v3.0 UpdatedMay 28, 2021 -
seaborn Public
Forked from mwaskom/seabornStatistical data visualization using matplotlib
Python BSD 3-Clause "New" or "Revised" License UpdatedJan 15, 2021 -
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HPC_schedulers Public
Forked from mikecroucher/HPC_schedulersWhich schedulers do public facing HPC systems use?
UpdatedApr 27, 2020 -
pybedtools Public
Forked from daler/pybedtoolsPython wrapper -- and more -- for Aaron Quinlan's BEDTools (bioinformatics tools)
Python Other UpdatedDec 24, 2019
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