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ahmedg86/README.md

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👋 Hi, I’m Ahmed

Plant Virology • Bioinformatics • Grapevine Biotechnology

I am a research associate specializing in plant virology, grapevine diseases, and bioinformatics.
My work integrates wet-lab diagnostics with high-throughput sequencing (HTS) and computational workflows to investigate viruses, microbiomes, and plant–pathogen interactions in Vitis and Muscadinia.


🔬 Research Focus

  • Plant virus detection & genome characterization
  • Diagnostic assay development (PCR / RT-PCR / qPCR)
  • HTS data processing (QC → trimming → mapping → assembly)
  • Viral genome interpretation & visualization
  • Microbiome profiling (16S / ITS)
  • Reproducible workflow design for bioinformatics

🧰 Tools & Skills

Core Bioinformatics Tools

FastQC MultiQC Cutadapt Trimmomatic BWA Bowtie2 minimap2 SAMtools bcftools IGV


Programming & Analysis

Python R Jupyter


Wet Lab Skills

  • RNA extraction & purification
  • Molecular diagnostics (PCR / RT-PCR)
  • Sample QC and virology workflows

📂 Featured Repository

A structured academic repository providing:

  • Modular HTS workflow templates
  • Diagnostics method outlines
  • Microbiome workflow scaffolds
  • Reproducible conda environments

Built for long-term research continuity in plant virology and grapevine biotechnology.


📊 GitHub Activity & Stats

Ahmed’s GitHub Stats Top Languages


📚 Peer-Reviewed Publications

  1. Ismail A., Gajjar P., Darwish A.G., Abuslima E., Islam T., Mohamed A.G., et al. (2025).
    Redox and osmotic homeostasis drive drought resilience in grapevine rootstocks.
    Plant Physiology & Biochemistry, 221:109618.

  2. Gajjar P., Ismail A., Islam T., Moniruzzaman M., Mohamed A.G., et al. (2024).
    Transcriptome profiling of the salt-excluder hybrid grapevine rootstock ‘Ruggeri’ under salinity.
    Plants, 13(6):837.

  3. Darwish A.G., Das P.R., Olaoye E., Gajjar P., Ismail A., Mohamed A.G., et al. (2025).
    Untargeted flower volatilome profiling highlights differential pollinator attraction strategies in muscadine.
    Frontiers in Plant Science.


📝 Refereed Publications in Progress

  1. Darwish A.G., Gajjar P., Ismail A., Park M., Moniruzzaman M., Mohamed A.G., et al.
    Muscadine seed bioactive compounds as targeted therapeutics for African American triple-negative breast cancer.
    Food Chemistry (Under Revision).

📫 Contact

  • Work Email: ahmed.mohamed2@famu.edu
  • Google Scholar:
    Google Scholar
  • Position: Research Associate, Grape Disease Diagnostics (NCPN–FL)
  • Institution: Florida A&M University (FAMU), Center for Viticulture & Small Fruit Research

🌱 Current Academic Focus

Developing reproducible, well-documented computational and molecular workflows to advance grapevine virus diagnostics and plant health research.

Popular repositories Loading

  1. grapevine-virology-workflows grapevine-virology-workflows Public

    Academic workflows for plant virology and grapevine research, providing structured templates for HTS data processing, viral sequence analysis, molecular diagnostics development, and microbiome prof…

    Shell

  2. ahmedg86 ahmedg86 Public

    Personal GitHub profile showcasing my work in plant virology, bioinformatics, and grapevine research.