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1. smc2-blackjax-rolling smc2-blackjax-rolling Public

   SMC² + rolling-window Bayesian estimation for SDE state-space models; GK-DPF v3-lite inner PF on JAX/BlackJAX

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2. Python-Model-Scenario-Simulation Python-Model-Scenario-Simulation Public

   Scenario simulation, validation, and packaging — the mandatory pre-SMC² stage for SDE state-space models

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3. Python-Model-OT-Control Python-Model-OT-Control Public

   Model-agnostic differentiable-transport framework for optimal-control schedules in N-of-1 physiological-recovery problems (JAX + Optax).

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4. Python-Model-Validation Python-Model-Validation Public

   Mathematical and clinical-validity gating tests for physiological models before vendoring into downstream control libraries (JAX + diffrax).

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5. python-smc2-filtering-control python-smc2-filtering-control Public

   SMC² for Bayesian filtering and stochastic optimal control on nonlinear models

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6. SWAT_model_dev_old_version SWAT_model_dev_old_version Public

   Self-contained SWAT (Sleep-Wake-Adenosine-Testosterone) 7-state SDE sandbox: dev model + psim pipeline + 6 scenarios (A–F) with the V_h-anabolic / V_n-catabolic rhythm-amplitude gate fix

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