Unbreaking Software

Multimodal data alignment and cell type analysis with coupled autoencoders.

A Claude Code skill for deliberate skill development during AI-assisted coding

An introduction to the practicing neuroscientist to data analysis in Python

Code and data for the book "Case Studies in Neural Data Analysis"

Resources on science communication

Repository for ICE1011, an undergraduate and graduate course on signal analysis for neuroscience

Project code for extracting neural population timescale from field potential data (LFP, ECoG, etc)

OpenDS4All project, hosted by LF AI & Data

This repo allows for the complete reproduction, from processed data, of all the main and supplemental figures in the manuscript Non-linear Dimensionality Reduction on Extracellular Waveforms Reveal…

A repository of neural manifold techniques described and compared in "Neural manifold analysis of brain circuit dynamics in health and disease"

BIPN 162 Notebook

This repository contains Python notebooks and instructions for running explorations of activation analysis and MVPA to demonstrate the interplay between fMRI methods and theory.

Courseware for CS1 courses that incorporate LLMs

Neural Data Science

Code that accompanies the book "Linear Algebra for Data Science"

Gallery of visualizations and analyses of the Allen Brain Observatory

An assortment of graphics utilities

Introduction to MRI and BIDS

Collection of tutorials about methods of computational neuroscience using Python

The is a repository containing MATLAB and Python code used in teaching graduate students in neuroscience.

Interactive Python course for using the Neurodata Without Borders format

Tools for working with single-neuron morphological reconstructions

a visualization method for neural data

Materials for NeuroMatchAcademy workshop for IBL data pipeline access

Jupyter notebook tutorial on using the Allen Mouse Brain Connectivity Atlas SDK