🤖 I have created a release beep boop

1.2.0 (2023-04-17)

Features

• add a function to extract chromosome names and lengths from a SAM file (413ead9)
• add a rule for genome indexing (f2d596e)
• add a rule to convert BAM files to BED (a948d98)
• add a rule to convert kmers table to PLINK (8c4bfad)
• add error handling (da92bdb)
• add k-mer counts dist. plots (7df4787)
• add k-mer counts dist. plots (79427b4)
• add k-mer counts dist. plots (c45c412)
• add kGWASflow.py (698dcb8)
• add new functions, update checkpoints + target outputs (6dac404)
• add rules for converting BAM to BED (33ed058)
• add rules for generating igv reports (igv-report) (2c4b4fe)
• improve the kmers GWAS summary reports (9d5de9e)
• udpate config files + add new parameters (38c939b)
• update blast wrapper to v1.25.0 (3da03ba)
• update to kmc 3.2.1 (c933fda)

Bug Fixes

• change output, log paths and report caption (827dcad)
• change x and y-axis ticks and labels (c7cdf87)
• fixed typo (1238463)
• make the script compatible to new kmers GWAS summary reports (3dbecf0)
• specify the spades version (35d5690)
• update input file paths (05d7e6b)
• update input, ouput and params paths (4637ed6)
• update output directory paths + add touch (a0500c2)

Performance Improvements

• update snakemake version to 7.25.0 (5b999c4)
• update to fasterq-dump wrapper v1.23.5 (373b406)

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