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Showing results

Make Zotero effective for us LaTeX holdouts

TypeScript 6,525 359 Updated Apr 8, 2026

Quickly search, compare, and analyze genomic and metagenomic data sets.

Python 542 90 Updated Apr 7, 2026

Cutadapt removes adapter sequences from sequencing reads

Python 575 139 Updated Apr 6, 2026

Aggregate results from bioinformatics analyses across many samples into a single report.

JavaScript 1,437 656 Updated Apr 6, 2026

Monthly HackyHour meetings in Würzburg

Jupyter Notebook 9 9 Updated Mar 27, 2026

Monthly HackyHour meetings in Göttingen http://hackyhour.github.io/Goettingen/

HTML 9 8 Updated Nov 7, 2023

Organization Website

CSS 4 3 Updated Mar 7, 2024

Materials for "Creating, building, testing, and documenting a Python project - a hands-on HOWTO - PyCon 2016"

17 6 Updated May 28, 2016

The futuristic, fabulous and free desktop app for working with scientific literature 🔬 📖

JavaScript 609 50 Updated Jul 7, 2020

Scripts to download genomes from the NCBI FTP servers

Python 1,071 178 Updated Apr 7, 2026

Open_Science_101

Shell 24 6 Updated Jun 10, 2016

🔭 Everpub - Making reusability a first class citizen in the scientific workflow.

Shell 71 20 Updated Mar 2, 2016

Modular command-line solution for visualisation, quality control and taxonomic partitioning of genome datasets

Python 212 46 Updated Aug 21, 2024

Easy TOC creation for GitHub README.md

Shell 3,289 2,699 Updated Oct 12, 2024

Structured input data for nucleotid.es bioinformatics software benchmarking

Ruby 7 6 Updated Jun 28, 2018

Official git repository for Biopython (originally converted from CVS)

Python 4,961 1,882 Updated Apr 7, 2026

Generate GeneContent trees based on based the presence or absence of Genes from a given bacterial pan-genome using bidirectional BLAST results obtained with proteinortho

Python 2 Updated Mar 14, 2019

Enables the calculation of phylogenies based on single copy core genome gene products, based on bidirectional BLAST results obtained with proteinortho

Python 4 Updated Mar 14, 2019

A set of command line tools (in Java) for manipulating high-throughput sequencing (HTS) data and formats such as SAM/BAM/CRAM and VCF.

Java 1,060 382 Updated Mar 24, 2026

Mission Statement der deutschsprachigen Open Science AG

Makefile 10 3 Updated Dec 9, 2014

Small collection of random useful perl scripts

Perl 21 14 Updated Jun 23, 2014

Sequence Feature streams

Perl 4 9 Updated Feb 7, 2020

BioPerl wrappers

Perl 36 18 Updated Apr 25, 2021

A pipeline for the computational evaluation of RNA-Seq data

Python 40 20 Updated Sep 10, 2024

Interactive lessons in bioinformatics.

Python 882 313 Updated Jul 19, 2021

⚡ ♒ Rapid prokaryotic genome annotation

Perl 971 235 Updated Jan 6, 2026

Core BioPerl 1.x code

Perl 315 185 Updated Sep 3, 2025

Toolkit for processing sequences in FASTA/Q formats

C 1,534 329 Updated Jun 1, 2025