Stars
Expanding the Functional Atlas of human Enhancer RNAs Beyond the Nucleus
A set of ready to use Agent Skills for research, science, engineering, analysis, finance and writing.
FlashRNA - An Efficient Model for Regulatory Genomics
RNAPro is a state-of-the-art RNA 3D folding model developed in collaboration with the hosts and winners of the Stanford RNA 3D Folding Kaggle competition.
Official repository of "ODesign: A World Model for Biomolecular Interaction Design"
ORB forcefield models from Orbital Materials
Fast deep learning methods for large-scale protein-protein interaction screening
Toolkit for structure-based deep learning on RNA.
Benchmarking code accompanying the release of `bioemu`
A scalable asynchronous reinforcement learning implementation with in-flight weight updates.
A high-throughput and memory-efficient inference and serving engine for LLMs
A Python library for fast and easy access to genomic resources such as sequence, data tracks, and annotations
Implement a ChatGPT-like LLM in PyTorch from scratch, step by step
Open-source framework for the research and development of foundation models.
⚡ TabPFN: Foundation Model for Tabular Data ⚡
Library for efficient training and application of Machine Learning Interatomic Potentials (MLIP)
[NeurIPS 2025 spotlight] Efficient factorized variant of the IPA module.
RNAGym is an extensive benchmark suite and resource for RNA fitness and structure prediction
AI Agent Framework, the Pydantic way
Refine.bio harmonizes petabytes of publicly available biological data into ready-to-use datasets for cancer researchers and AI/ML scientists.
A benchmark for comprehensive evaluation on protein structure tokenization methods
Inference code for scalable emulation of protein equilibrium ensembles with generative deep learning
Results and data from the pilot round of the Protein Engineering Tournament
Minimalistic 4D-parallelism distributed training framework for education purpose
Nature Methods: RNA foundation model (together with RhoFold)
🧬 Augmenting zero-shot mutant prediction by retrieval-based logits fusion. (ISMB/ECCB 2025)