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1. castgen castgen Public

   castgen: R package with methods for estimating the number of individuals to sample from a population in order to capture a predefined percentage of diversity

   R 1

2. Binx Binx Public

   Binx: A Rust-based CLI tool for polyploid and diploid genomic analysis

   Rust

3. Capturing_genomic_diversity Capturing_genomic_diversity Public

   Estimate the number of individuals to sample from a population to capture genomic diversity.

   Python

4. SimpleSnek SimpleSnek Public

   Snakemake automated workflow for GATK variant calling pipeline

   Python

5. Breeding-Insight/BIGapp Breeding-Insight/BIGapp Public

   The BIG app is a user-friendly R Shiny app to analyze genomic data without needing to use command-line tools and works across different species ploidy.

   R 5 7

6. Breeding-Insight/BIGr Breeding-Insight/BIGr Public

   This R package contains the functions developed within Breeding Insight to analyze diploid and polyploid breeding and genetic data

   R 3 4