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renders a KEGGML file and displays a KEGG pathway

JavaScript 10 5 Updated Jul 14, 2016

This repository hosts the software of GEMORNA, a generative AI tool for mRNA sequence design.

Python 89 20 Updated Nov 11, 2025

Vaeda method for computational doublet annotation

Python 19 5 Updated Feb 1, 2026

A beautiful, simple, clean, and responsive Jekyll theme for academics

HTML 15,459 12,909 Updated Apr 8, 2026

Resume builder for academics and engineers

Python 16,265 1,180 Updated Apr 6, 2026

RJH Curriculum Vitae

TeX 102 69 Updated Apr 5, 2026

A Python package to visualise neuroanatomical data in atlas space

Python 637 102 Updated Apr 8, 2026

a python api for higlass

Jupyter Notebook 11 1 Updated Mar 15, 2023

Interactive 2D scatter plot widget for Jupyter Lab and Notebook. Scales to millions of points!

Python 458 28 Updated Apr 10, 2026

Comparison of methods for trajectory inference on single-cell data 🥇

R 222 45 Updated Aug 30, 2023

Productivity Tools for Plotly + Pandas

Jupyter Notebook 3,088 675 Updated Jul 3, 2024

Access to Biological Web Services from Python.

Python 334 69 Updated Mar 27, 2026

A modern, high customizable, responsive Jekyll theme for documentation with built-in search.

SCSS 8,957 3,790 Updated Apr 10, 2026

Use ImageJ from Python

Python 529 92 Updated Mar 16, 2026

📝 A nicely formatted LaTeX preprint template

TeX 580 78 Updated Jul 7, 2023

⚡ TabPFN: Foundation Model for Tabular Data ⚡

Python 6,048 614 Updated Apr 12, 2026

scDIOR: Single cell data IO softwaRe

HTML 155 12 Updated Feb 15, 2022

Tab complete for HDF5 files

Shell 7 2 Updated Jun 2, 2020
Jupyter Notebook 117 31 Updated Apr 24, 2024

Python-based UCSC genome browser snapshot-taker and gallery-maker

JavaScript 12 3 Updated May 21, 2024

🧬 gget enables efficient querying of genomic reference databases

Python 1,117 85 Updated Apr 9, 2026

A simple and efficient tool to parallelize Pandas operations on all available CPUs

Python 3,810 213 Updated Jul 9, 2024

A small library for automatical adjustment of text position in matplotlib plots to minimize overlaps.

Jupyter Notebook 1,650 96 Updated Apr 22, 2025

Performs memory-efficient reservoir sampling on very large input files delimited by newlines

C 70 12 Updated Mar 6, 2020

Extremely fast Query Engine for DataFrames, written in Rust

Rust 38,121 2,776 Updated Apr 12, 2026

Embed Plotly Dash into your Flask applications. Docker-based Flask project wrapping Plotly's Dash. Include multiple Dash apps in a single Flask app.

Python 68 19 Updated Sep 27, 2023

A cross-platform and ultrafast toolkit for FASTA/Q file manipulation

Go 1,538 176 Updated Mar 31, 2026

Draw UpSet plots with Matplotlib

Python 377 82 Updated May 2, 2024

2 ~ 6 sets venn diagram for python

Python 354 123 Updated May 16, 2024

👁️ Python library to plot DNA sequence features (e.g. from Genbank files)

Python 686 104 Updated Jul 2, 2025
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