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This repository hosts the software of GEMORNA, a generative AI tool for mRNA sequence design.

Python 77 16 Updated Nov 11, 2025

Vaeda method for computational doublet annotation

Python 18 5 Updated Jul 2, 2024

A beautiful, simple, clean, and responsive Jekyll theme for academics

HTML 14,749 12,615 Updated Dec 17, 2025

Typst-based CV/resume generator for academics and engineers

Python 3,930 349 Updated Dec 15, 2025

RJH Curriculum Vitae

TeX 101 70 Updated Dec 14, 2025

A Python package to visualise neuroanatomical data in atlas space

Python 616 93 Updated Dec 2, 2025

a python api for higlass

Jupyter Notebook 11 1 Updated Mar 15, 2023

Interactive 2D scatter plot widget for Jupyter Lab and Notebook. Scales to millions of points!

Python 451 27 Updated Dec 2, 2025

Comparison of methods for trajectory inference on single-cell data 🥇

R 218 44 Updated Aug 30, 2023

Productivity Tools for Plotly + Pandas

Jupyter Notebook 3,088 672 Updated Jul 3, 2024

Access to Biological Web Services from Python.

Python 325 67 Updated Dec 6, 2025

A modern, high customizable, responsive Jekyll theme for documentation with built-in search.

SCSS 8,751 3,785 Updated Dec 12, 2025

Use ImageJ from Python

Python 527 92 Updated Nov 10, 2025

📝 A nicely formatted LaTeX preprint template

TeX 577 78 Updated Jul 7, 2023

⚡ TabPFN: Foundation Model for Tabular Data ⚡

Jupyter Notebook 5,326 525 Updated Dec 18, 2025

scDIOR: Single cell data IO softwaRe

HTML 150 12 Updated Feb 15, 2022

Tab complete for HDF5 files

Shell 7 2 Updated Jun 2, 2020
Jupyter Notebook 114 29 Updated Apr 24, 2024

Python-based UCSC genome browser snapshot-taker and gallery-maker

JavaScript 12 3 Updated May 21, 2024

🧬 gget enables efficient querying of genomic reference databases

Python 1,089 80 Updated Dec 19, 2025

A simple and efficient tool to parallelize Pandas operations on all available CPUs

Python 3,802 212 Updated Jul 9, 2024

A small library for automatical adjustment of text position in matplotlib plots to minimize overlaps.

Jupyter Notebook 1,631 92 Updated Apr 22, 2025

Performs memory-efficient reservoir sampling on very large input files delimited by newlines

C 69 12 Updated Mar 6, 2020

Extremely fast Query Engine for DataFrames, written in Rust

Rust 36,610 2,521 Updated Dec 19, 2025

Embed Plotly Dash into your Flask applications. Docker-based Flask project wrapping Plotly's Dash. Include multiple Dash apps in a single Flask app.

Python 70 19 Updated Sep 27, 2023

A cross-platform and ultrafast toolkit for FASTA/Q file manipulation

Go 1,489 174 Updated Dec 19, 2025

Draw UpSet plots with Matplotlib

Python 373 77 Updated May 2, 2024

2 ~ 6 sets venn diagram for python

Python 349 122 Updated May 16, 2024

👁️ Python library to plot DNA sequence features (e.g. from Genbank files)

Python 667 103 Updated Jul 2, 2025

Genomic interval operations on Pandas DataFrames

Python 184 35 Updated Dec 2, 2025
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