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Analysis tools for wepy simulations

Python 1 1 Updated Jul 31, 2025

ML-based molecular representation models using PyTorch

Python 15 3 Updated Aug 11, 2025

An example of how to write a plugin for OpenMM

C++ 31 22 Updated Jan 25, 2024

A PyTorch OpenMM plugin to generate forces for Flexible Topology simulations

C++ 5 1 Updated May 15, 2022

WESTPA: The Weighted Ensemble Simulation Toolkit with Parallelization and Analysis

Python 209 60 Updated Dec 9, 2025

A free, open-source tool for modeling chemical reaction networks in Python

Python 13 2 Updated Jan 16, 2024

A new logP predictor method using GSG and NNs

Python 9 1 Updated Oct 12, 2023

Provides a function to measure the energy usage of another function.

Python 153 10 Updated Jun 3, 2021

Challenge details, inputs, and results for the SAMPL7 series of challenges

Python 48 32 Updated Nov 2, 2021

Weighted Ensemble simulation framework in Python

Python 58 22 Updated Dec 1, 2025

Multi-Atom Structure/Selection Toolkit with Interaction Capabilities

Python 10 1 Updated Jan 28, 2018