Stars
Consistent adapter and quality trimming for NGS, with extra functionality for RRBS data
Gemma open-weight LLM library, from Google DeepMind
A CLI/TUI toolkit for bulk-processing and generating Anki flashcards with LLMs.
AI agent toolkit: unified LLM API, agent loop, TUI, coding agent CLI
git worktrees + tmux windows for zero-friction parallel dev
Open-source E-ink monitor. Mirror of https://gitlab.com/zephray/glider
Python package for detection of chimerism and contamination in prokaryotic genomes.
Implement a ChatGPT-like LLM in PyTorch from scratch, step by step
aider is AI pair programming in your terminal
Unsloth Studio is a web UI for training and running open models like Gemma 4, Qwen3.6, DeepSeek, gpt-oss locally.
2-2000x faster ML algos, 50% less memory usage, works on all hardware - new and old.
Your own personal AI assistant. Any OS. Any Platform. The lobster way. 🦞
Lightweight, clear, and fully extensible AI agent infrastructure — learn easily, customize anything 🐉
automated censorship evasion for the client-side and server-side
A minimal PyTorch re-implementation of AlphaFold2's model & training
Cell2Sentence: Teaching Large Language Models the Language of Biology
Zotero is a free, easy-to-use tool to help you collect, organize, annotate, cite, and share your research sources.
SameStr identifies shared strains between pairs of metagenomic samples based on the similarity of SNV profiles.
Easier download/extract of FASTA/Q read data and metadata from the ENA, NCBI, AWS or GCP.
From dereplication to genome enrichment: Enhancing genome recovery across metagenomic samples using MAGmax
Aligns short reads using dynamic seed size with strobemers
Variational autoencoder for metagenomic binning
Accurate sample inference from amplicon data with single nucleotide resolution
SemiBin: metagenomics binning with self-supervised deep learning