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bioc-rnaseq Public
Forked from carpentries-incubator/bioc-rnaseqAnalysis and Interpretation of Bulk RNA-Seq Data using Bioconductor
R Other UpdatedSep 16, 2023 -
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SoybeanAtlas_issues Public
A repo to report issues on the Soybean Expression Atlas database.
1 UpdatedJun 19, 2023 -
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PCMR_solutions Public
Solutions for the practice problems in the book "Phylogenetic Comparative Methods in R", by Liam Revell and Luke Harmon
R UpdatedJun 2, 2023 -
polyploid_GRNs Public
Code and data associated with the manuscript "Whole-genome duplications and the long-term evolution of gene regulatory networks in angiosperms"
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bears Public
An R package to create gene expression atlases from bulk RNA-seq data on NCBI SRA
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planttfhunter Public
An R package to identify plant transcription factors from protein sequence data and classify them in families
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magrene Public
Motif analysis in gene regulatory networks
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pkg_status Public
A repo to track the build status of my R packages on Bioconductor and GitHub
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Material for the workshop "Inference and Analysis of Synteny Networks with syntenet", presented at EuroBioc2022
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quarto_theme Public
Custom styling for my slide presentations with Quarto
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pg_transcriptomedata Public
Code to obtain transcriptome data in the Plant Genomes dashboard
R UpdatedMay 5, 2022 -
pg_genomedata Public
Code to obtain genome data in the Plant Genomes dashboard
R UpdatedApr 22, 2022 -
plantgenomes Public
A dashboard for exploratory analysis of statistics on plant genomes
R UpdatedApr 1, 2022 -
plant_transcriptomes Public
Data and code used in the Plant Genomes dashboard
R UpdatedMar 13, 2022 -
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SoyPestGCN Public
An R/Shiny package to explore a gene coexpression network of soybean tissues infested with insects
R UpdatedDec 10, 2021 -
IQG Public
R solutions for the exercises in "Introduction to Quantitative Genetics", by DS Falconer.
CSS UpdatedDec 8, 2021 -
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GmPR1 Public
Code and data associated with the paper "Pathogenesis-related protein 1 (PR-1) genes in soybean: genome-wide identification, structural analysis and expression profiling under multiple biotic and a…
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SoyFungiGCN Public
A Shiny app to explore the gene coexpression network of soybean tissues infected with phytopathogenic fungi
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SoyFungi_GWAS_GCN Public
Data and code associated with the manuscript "Integration of genome-wide association studies and gene coexpression networks unveils promising soybean resistance genes against five common fungal pat…
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