Personal website and blog

Candidate Gene Miner

Easy and comprehensive biological network reconstruction and analysis

An R package to identify and classify duplicated genes from whole-genome protein sequence data

Code and data associated with the paper "Gene expression divergence following gene and genome duplications in spatially resolved plant transcriptomes"

An R interface to the PLAZA database for plant comparative genomics

An R package to infer and analyze synteny networks from protein sequences

Code and data associated with the paper 'The Soybean Expression Atlas v2: a comprehensive database of over 5000 RNA-seq samples'

Materials for the UGent course "Bioinformatics 2"

Code and data associated with the paper "Learning and teaching biological data science in the Bioconductor community"

A dashboard to explore and download the duplicated gene repertoire in eukaryote species

An R package for comparative transcriptomic analyses of hybrids and their progenitors

An R package to compute expression divergence metrics

Code and data associated with the paper "doubletrouble: an R/Bioconductor package for the identification, classification, and analysis of gene and genome duplications"

Materials for the course "Network Analysis in Systems Biology with R/Bioconductor"

Written materials for the course "Introduction to Computational Evolutionary Biology"

Materials for the course "Network Analysis in R"

Data and code associated with the paper "HybridExpress: an R/Bioconductor package for comparative transcriptomic analyses of hybrids and their progenitors"

An R package to perform systematic quality checks on comparative genomics analyses

An R package to create a standard project structure for reproducible research

Code handouts for the course "Introduction to RNA-seq analysis with R/Bioconductor"

Data and code associated with the paper "Assessing the quality of comparative genomics data and results with the cogeqc R/Bioconductor package"

Materials for the course "Introduction to R/Bioconductor"