Stars
fMRI preprocessing pipeline and analysis tools adapted for rodent images. Visit the full documentation at https://rabies.readthedocs.io/
Collecting papers from PubMed Central and extracting text, metadata and stereotactic coordinates.
Useful tools from the Network Neuroscience Lab
A toolbox for dynamic functional connectivity and multiverse analysis
GLSL surface rendering source code. Compiled versions available from NITRC. Loads 3DS, CTM, DXF, FreeSurfer, GII (GIfTI), GTS, LWO2, MS3D, MZ3, NV (BrainNetViewer), OBJ, OFF, PLY, STL, VTK. Tractog…
Post-processing of fMRIPrep, NiBabies, and HCP outputs
The Web framework for perfectionists with deadlines.
NSGA2, NSGA3, R-NSGA3, MOEAD, Genetic Algorithms (GA), Differential Evolution (DE), CMAES, PSO
A toolbox for generating spatial null maps using geometric eigenmodes
Chat with GitHub Copilot in Neovim
micapipe from the Multimodal imaging and connectome analysis lab (http://mica-mni.github.io) at the Montreal Neurological Institute. Read The Docs documentation below
Samples for CUDA Developers which demonstrates features in CUDA Toolkit
Standalone Activation Likelihood Estimation package based on Python
A C implementation of TVB's simulation core. It implements a brain network model composed of ReducedWongWang neural masses with feedback inhibition control (Schirner et al. 2018, Deco et al. 2014)
cross-species alignment (joint-embedding between human and macaque)
A package for publication-ready brain surface figures
Color palette package in R inspired by works at the Metropolitan Museum of Art in New York
The ENIGMA Toolbox is an open-source repository for accessing 100+ ENIGMA statistical maps, visualizing cortical and subcortical surface data, and relating neuroimaging findings to micro- and macro…
A statistics and context decoding toolbox for neuroimaging.
Open-source demos hosted on Dash Gallery
brainlife / app-fmriprep
Forked from faskowit/app-run-fmriprepfMRIPrep is a functional magnetic resonance imaging (fMRI) data preprocessing pipeline that is designed to provide an easily accessible, state-of-the-art interface that is robust to variations in s…
A beautiful, simple, clean, and responsive Jekyll theme for academics
A very small toolbox for working with data from the Parkinson's Progression Markers Initiative (PPMI)
A list of tutorials and other resources useful to learn open science and neuroimaging, EEG and MEG
VisualQC : assistive tool to ease the quality control workflow of neuroimaging data.