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  • SLU, the Swedish University of Agricultural Sciences
  • Uppsala

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Achievement: YOLOAchievement: Pair ExtraordinaireAchievement: Pull Sharkx2

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Achievement: YOLOAchievement: Pair ExtraordinaireAchievement: Pull Sharkx2

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amrei-bp/README.md

Hi there 👋 I am Amrei Binzer-Panchal,

a bioinformatician and the head of SLU's Bioinformatics Infrastructure, SLUBI.

I support researchers at The Swedish Agricultural University in matters of bioinformatics in a variety of ways, such as performing bioinformatic analyses, developing workflows on request, teaching, or simply answering questions that come up when running analyses.

With a background in biology and ecology, I have started my bioinformatics career with microarrays, but have since worked on sequence based data, performing analyses such as expression analyses, genotyping, single cell analyses, GWAS, metagenomics analyses, and more.

Make you own Octocat with this fun generator: https://myoctocat.com/

My skills

My skills

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  1. SLUBioinformaticsInfrastructure/Nextflow_training_qc_pipeline SLUBioinformaticsInfrastructure/Nextflow_training_qc_pipeline Public

    A short pipeline for students to improve their understanding on using Nextflow as a workflow manager.

    Nextflow 1 1

  2. SLUBioinformaticsInfrastructure/Three_Bees_Workshop_Series SLUBioinformaticsInfrastructure/Three_Bees_Workshop_Series Public

    The repository for the collaborative workshop series between SLUBI and SLU's Center for Statistics.

    HTML 3 2

  3. SLUBioinformaticsInfrastructure/Dardel_miscellaneous SLUBioinformaticsInfrastructure/Dardel_miscellaneous Public

    For all the small things that make life easier and should be kept in mind when running projects on Dardel.

    2

  4. SLUBioinformaticsInfrastructure/quarto_homepage SLUBioinformaticsInfrastructure/quarto_homepage Public

    JavaScript

  5. SLUBioinformaticsInfrastructure/nf-core_on_dardel SLUBioinformaticsInfrastructure/nf-core_on_dardel Public

    How to run nf-core pipelines on PDC/Dardel, with useful scripts

    Shell 1 1

  6. Intro_to_Bioinformatics_NGS Intro_to_Bioinformatics_NGS Public

    A repository for a course that teaches basic NGS techniques. The students learn to use containers to run quality control and mapping tools on DNA and RNA sequencing data.

    CSS 1