Stars
AI agents running research on single-GPU nanochat training automatically
[Nature Machine Intelligence] ImmunoStruct enables multimodal deep learning for immunogenicity prediction
de novo design of high affinity biological binders
Force-field-enhanced Neural Networks optimized library
A Euclidean diffusion model for structure-based drug design.
Kosmos: An AI Scientist for Autonomous Discovery - An implementation and adaptation to be driven by Claude Code or API - Based on the Kosmos AI Paper - https://arxiv.org/abs/2511.02824
Bridging Smoothed Molecular Dynamics and Score-Based Learning for Conformational Ensembles
Feynman-Kac steering for controllable protein diffusion
Official repository of "ODesign: A World Model for Biomolecular Interaction Design"
TorchCFM: a Conditional Flow Matching library
A general framework for inference-time scaling and steering of diffusion models with arbitrary rewards.
Code for "Calibrating Generative Models" by Henry Smith, Nathaniel Diamant, and Brian Trippe
Repository for StripedHyena, a state-of-the-art beyond Transformer architecture
Biological foundation modeling from molecular to genome scale
One protein is all you need (ICLR 2026)
The Family of Diffusion Protein Language Models (DPLM)
The official implementation for Pseudo Numerical Methods for Diffusion Models on Manifolds (PNDM, PLMS | ICLR2022)
Discovering Interpretable Features in Protein Language Models via Sparse Autoencoders
[ICLR 2025] Code for the paper "Beyond Autoregression: Discrete Diffusion for Complex Reasoning and Planning"
Lightning fast C++/CUDA neural network framework
Samples for CUDA Developers which demonstrates features in CUDA Toolkit
MMseqs2: ultra fast and sensitive search and clustering suite
Official PyTorch Implementation of "Diffusion Transformers with Representation Autoencoders"