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1. PRIMEprep PRIMEprep Public

   Preprocessing and mapping of CAGE sequencing data

   Shell 1

2. ChromTransfer ChromTransfer Public

   ChromTransfer: a transfer learning approach for modeling of regulatory sequences

   Jupyter Notebook 5

3. PRIME PRIME Public

   PRIME - regulatory element analysis using transcription initiation data

   R 2 2

4. PRIMEloci PRIMEloci Public

   Prediction of regulatory elements from transcription initiation data

   R 1 1

5. scE2G_analysis scE2G_analysis Public

   Scripts and notebooks for data preprocessing and analyses performed in Sheth, Qiu, et al. 2024

   HTML 1

6. DeepCompARE DeepCompARE Public

   All code for DeepCompARE project

   Python 3