Python library to parse, format, validate, normalize, and map sequence variants. `pip install hgvs`

[in development] Proof-of-Concept variation translation, validation, and registration service

bioutils provides some common tools and lookup tables used primarly by the hgvs and uta packages

Universal Transcript Archive: comprehensive genome-transcript alignments; multiple transcript sources, versions, and alignment methods; available as a docker image

GA4GH Variation Representation Python Implementation

non-redundant, compressed, journalled, file-based storage for biological sequences

simplified searching, fetching, and parsing records from NCBI using their E-utilities interface

BioJava is an open-source project dedicated to providing a Java framework for processing biological data. It provides analytical and statistical routines, parsers for common file formats and allows…

The java implementation of the MMTF API, decoder and encoder.

💥 Algorithms that are built around BioJava and run on Apache Spark

HTML/JS based user interfaces for BioJava

A repository to host the competition for a new BioJava log

A tutorial for BioJava 3

Mirror of Apache Spark

WebGL protein viewer

Convert a MediaWiki export XML file into MarkDown as a series of git commits

supplemental material for a manuscript that is under review

Biojava based RCSB Viewers

Methods for fast structural database searches and clustering