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test-publishing Public
Figuring out how to do website publishing from a github action using a commit
HTML Apache License 2.0 UpdatedApr 30, 2026 -
annotation-beacon Public
A lightweight Beacon v2-compatible server for federated functional annotation discovery
Python Apache License 2.0 UpdatedMar 25, 2026 -
annotation-aggregate-beacon Public
A Beacon v2-compatible aggregator that federates queries across multiple annotation beacon instances
Python Apache License 2.0 UpdatedMar 25, 2026 -
data-loader-etl Public
An iteration of the AMR Portal ETL toolkit with a refreshed config file format and database
Python Apache License 2.0 UpdatedMar 16, 2026 -
amr-portal Public
Forked from Ensembl/amr-portalA portal for viewing antimicrobial resistance (AMR) data
Python Apache License 2.0 UpdatedMar 2, 2026 -
cram_3_1_htsjdk Public
A brief set of markdown files outlining CRAM 3.1 addition into htsjdk. Lots of caveats here
UpdatedFeb 25, 2026 -
bqm_report Public
Reports for the bqm
Python BSD 3-Clause "New" or "Revised" License UpdatedFeb 24, 2026 -
htsjdk Public
Forked from samtools/htsjdkA Java API for high-throughput sequencing data (HTS) formats.
Java UpdatedFeb 23, 2026 -
valueset-api Public
An API for managing controlled vocabularies
Python Apache License 2.0 UpdatedFeb 18, 2026 -
py_generic_emailer Public
A batch mailer written in Python
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DuckDB code to do searches of Ensembl species and the NCBI taxonomy
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refget-server-python Public
An implementation of the Refget v2.0.0 standard using Python
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hts-specs Public
Forked from samtools/hts-specsSpecifications of SAM/BAM and related high-throughput sequencing file formats
TeX UpdatedJun 2, 2025 -
refget-compliance Public
Compliance reports for GA4GH refget implementations
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public-plugins Public
Forked from Ensembl/public-pluginsPlugins for an Ensembl website
JavaScript Apache License 2.0 UpdatedMar 13, 2025 -
ensembl-webcode Public
Forked from Ensembl/ensembl-webcodeThe code to run an Ensembl website
Perl Apache License 2.0 UpdatedMar 13, 2025 -
biomart-data-connect Public
Forked from sudenni/biomart-data-connectIntership with GTI team at EMBL-EBI
Python UpdatedJul 26, 2024 -
refget-server-perl Public
Perl implementation of the GA4GH refget protocol
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rust-gc-count Public
A tool for generating wiggle files of GC from DNA written in Rust.
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ensembl-website-help-and-docs Public
Forked from Ensembl/ensembl-website-help-and-docsdocumentation for the new Ensembl site
TypeScript UpdatedJan 8, 2024 -
alphamissense Public
Forked from google-deepmind/alphamissensePython Apache License 2.0 UpdatedSep 29, 2023 -
seqcol-spec Public
Forked from ga4gh/refgetWebsite for DRAFT specification docs for GA4GH Sequence Collections.
HTML UpdatedAug 25, 2023 -
withings-sync Public
Forked from jaroslawhartman/withings-syncSynchronisation of Withings weight
Python MIT License UpdatedJun 1, 2023 -
w3id.org Public
Forked from perma-id/w3id.orgWebsite source code for w3id.org
HTML UpdatedMay 25, 2023 -
refget-application-note Public
Code associated with the refget application note
Shell Apache License 2.0 UpdatedMay 22, 2023 -
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dna_book_formatter Public
Code for formatting DNA from FASTA and BED files
Java Apache License 2.0 UpdatedDec 8, 2021 -
refget Public
Forked from refgenie/refgetPython tools for refget sequence identification and retrieval
Jupyter Notebook BSD 2-Clause "Simplified" License UpdatedJun 24, 2020 -
large-scale-genomics-wiki Public
Forked from ga4gh/large-scale-genomics-wikiHomepage for the Large Scale Genomics Work Stream
UpdatedMar 25, 2020
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