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Showing results

Statistical Rethinking Course 2026

R 674 71 Updated Mar 20, 2026

🤖 Open‑source deep-learning-based splice‑site predictor that decodes splicing patterns across species

Python 40 11 Updated Dec 11, 2025

Code used for DeepRNAseqPaper

R 2 Updated Jul 21, 2025
Jupyter Notebook 24 4 Updated May 7, 2025

A short tutorial on how to use RSEM

138 45 Updated Apr 19, 2020

A streamlined workflow for DNA methylation-based classification of tumours.

HTML 1 Updated Aug 27, 2020

DNA methylation-based classification of central nervous system tumours

HTML 10 3 Updated Feb 1, 2023

Every Gene Ever Annotated in published GWAS

51 3 Updated Nov 28, 2022
Python 5 Updated Dec 8, 2023

RNA-seq for rare diseases pipeline using nextflow

Nextflow 1 Updated Feb 26, 2026

Reproducibility of "Alternative start and termination sites of transcription drive most transcript isoform differences across human tissues."

HTML 4 3 Updated Mar 11, 2019
Python 73 13 Updated Mar 13, 2026

🧬 gget enables efficient querying of genomic reference databases

Python 1,112 85 Updated Apr 2, 2026

A tool to find sequencing data and metadata from public databases.

Python 598 48 Updated Aug 13, 2024

A genome visualization python package for comparative genomics

Python 398 23 Updated Dec 6, 2025

Command-line tool for the visualization of splicing events across multiple samples

Python 140 45 Updated Jun 28, 2024

User guide, associated script, sample data for ExomeCNV R Package

Perl 2 Updated Sep 7, 2021

OpenMendel tutorials for ASHG Workshop

HTML 7 Updated Oct 26, 2020

Code associated with 2019 manuscript entitled "Transcript expression-aware annotation improves rare variant discovery and interpretation"

Python 34 6 Updated May 5, 2022

D3 JavaScript interactive visualization of genome feature (gff) files

Python 2 1 Updated Jul 5, 2015
R 12 3 Updated Apr 2, 2021

Genome-wide investigation of non-canonical splice sites

Python 6 2 Updated Feb 10, 2020

Tool for the Quality Control of Long-Read Defined Transcriptomes

Python 258 64 Updated Mar 31, 2026

Python script to download all Springer books released for free during the 2020 COVID-19 quarantine

Python 1,645 364 Updated Dec 8, 2022

Cell types enrichment analysis

HTML 210 62 Updated May 27, 2024

All Algorithms implemented in Python

Python 219,232 50,296 Updated Apr 2, 2026

A comprehensive tutorial about GWAS and PRS

975 345 Updated Apr 1, 2023

A tutorial on the most important features and idioms of Scala that you need to use Spark's Scala APIs.

Jupyter Notebook 674 208 Updated Jul 9, 2022

A simple spark standalone cluster for your testing environment purposses

Dockerfile 568 351 Updated Mar 6, 2024
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