from vibe coding to agentic engineering - practice makes claude perfect

A set of ready to use Agent Skills for research, science, engineering, analysis, finance and writing.

a set of SKILLS.md for doing bioinformatics with agents like claude code

The agent harness performance optimization system. Skills, instincts, memory, security, and research-first development for Claude Code, Codex, Opencode, Cursor and beyond.

Technology-invariant pipeline for spatial omics analysis that scales to millions of cells (Xenium / Visium HD / MERSCOPE / CosMx / PhenoCycler / MACSima / etc)

Claude Code skill implementing Manus-style persistent markdown planning — the workflow pattern behind the $2B acquisition.

Public repository for Agent Skills

A collection of Claude Skills from Posit

Code used to benchmark Xenium

A curated list of Claude Skills.

A general purpose scientific writer

The AI Scientist-v2: Workshop-Level Automated Scientific Discovery via Agentic Tree Search

Code and documentation to train Stanford's Alpaca models, and generate the data.

data-to-paper: Backward-traceable AI-driven scientific research

PyPaperBot is a Python tool for downloading scientific papers using Google Scholar, Crossref, SciHub, and SciDB.

BiocompR is a R package build upon ggplot2 to improve commonly used plots dedicated to data comparison, dataset exploration and, ultimately provides users with versatile and customizable graphics.

Toolkit for processing sequences in FASTA/Q formats

An introductory course to eQTL analysis.

En este repositorio encontraréis todo el material que hemos ido desarrollando sobre ciencia reproducible y colaborativa centrándonos en R, Git y GitHub

Introducción a la programación funcional

Unix, R and python tools for genomics and data science