Sweep-line algorithm for genomic features. Detect overlaps on large files w/ minimal memory.

List of gene lists for genomic analyses.

an API for intersections of genomic data

The D4 Quantitative Data Format

BED QC tool (in the making)

An R interface to d4tools

The python binding for D4 format

C++ Implementations of sketch data structures with SIMD Parallelism, including Python bindings

Detect novel (and reference) STR expansions from short-read data

Multi-sample genome coverage viewer to observe large, coverage-based anomalies alongside annotations and sample metadata

genetic variant expressions, annotation, and filtering for great good.

don't get DUP'ed or DEL'ed by your putative SVs.

Simple API that abstracts out differences between the blobstores across different cloud providers.

useful command-line tools written to showcase hts-nim

simple jobs submission via command-line for AWS batch

find large indels (in the blind spot between GATK/freebayes and SV callers)

pathoscore evaluates variant pathogenicity tools and scores.

Free online textbook of Jupyter notebooks for fast.ai Computational Linear Algebra course

Structural variation and indel detection by local assembly

Lua annotation scripts for vcfanno

📙 Amazon Web Services — a practical guide

A supercharged AWS command line interface (CLI).

The command-line interface to GGD

Stupid Simple Elastic Compute Cloud

conda recipes for genomic data

sort genomic data

Crow is very fast and easy to use C++ micro web framework (inspired by Python Flask)

Stupid Simple Structural Variant View

Interactive in-browser track viewer