Stars
Protein-Ligand Interaction Profiler - Analyze and visualize non-covalent protein-ligand interactions in PDB files according to 📝 Schake, Bolz, et al. (2025), https://doi.org/10.1093/nar/gkaf361
All in one Structure-Based Virtual Screening workflow based on the concept of consensus docking.
maxsmi: a guide to SMILES augmentation. Find the optimal SMILES augmentation for accurate molecular prediction.
Plausibility checks for generated molecule poses.
LaTeX to image converter with web UI using Node.js / Docker
Timeful (formerly Schej) is a scheduling platform helps you find the best time for a group to meet. It is a free availability poll that is easy to use and integrates with your calendar.
[ICML 2025 GenBio Workshop] Official Implementation for "Electrostatics from Laplacian Eigenbasis for Neural Network Interatomic Potentials"
Retrieve author and publication information from Google Scholar in a friendly, Pythonic way without having to worry about CAPTCHAs!
Papers from the computer science community to read and discuss.
A smarter cd command. Supports all major shells.
Github Pages template based upon HTML and Markdown for personal, portfolio-based websites.
An open-source cross-platform alternative to AirDrop
🧱 Describe your site, AI builds it, you own it as Markdown. Snap together Tailwind blocks like Lego — landing pages, blogs, portfolios, docs & more. No AI slop. Free to deploy anywhere 👇
Single-cell analysis in Python. Scales to >100M cells.
Vitessce is a visual integration tool for exploration of spatial single-cell experiments.
Open-source data lakehouse for biology. Query, trace & validate with a lineage-native lakehouse that supports bio-formats, registries & ontologies. 🍊YC S22
Approaches for looking at differential expression and differential abundance in scRNA-seq
PHOENIX: a tool to infer biologically informed NeuralODEs describing genome-wide regulatory dynamics
List of Computer Science courses with video lectures.
📚 Freely available programming books