Stars
lowfat - slim your command output. strips noise, saves tokens.
Code for "Predicting Cellular Responses to Novel Drug Perturbations at a Single-Cell Resolution", NeurIPS 2022.
Main repository for GSEA OmniBenchmark workflow, containing definition yaml and containers for running benchmarking pipeline with singularity
Universal Rust multiplexer with a typed SDK — drive any CLI or TUI app from code. Native on Linux, macOS, and Windows.
Learning Single-Cell Perturbation Responses using Neural Optimal Transport
Shi et al. 2026 Genome-scale functional mapping of the mammalian whole brain with in vivo Perturb-seq
R Interface to the Spectra Library for Large Scale Eigenvalue and SVD Problems
An R package for feature selection in topological spaces.
The only tool you need to know what is happening and how to fix it.
live recipes to contribute to omni-scrna benchmark
Demonstrate that UMAP and Leiden analysis is not reproducible between different cpu architectures.
rapids-singlecell: GPU-accelerated framework for scRNA analysis
An add-on package for R primarily aimed at improving access to R for blind users. The package contains tools and functions that will help get a student through their first year statistics course, a…
Open-source infrastructure for Computer-Use Agents. Sandboxes, SDKs, and benchmarks to train and evaluate AI agents that can control full desktops (macOS, Linux, Windows).
📃 A curated and up-to-date list of resources on software documentation templates, tools, guides, examples, etc.
Generate a Workflow RO-Crate from a best-practice workflow repository
A Snakemake reporter plugin that exports workflow runs as validated RO-Crates with Metadata4Ing provenance, supporting both RO-Crate 1.1 and Provenance Run Crate profiles.
Snakemake Report Plugin to automatically create Workflow Run RO-Crate after workflow runs holding all metadata of that workflow