Search results

How to speed up DIAMOND blastp with --very-sensitive without losing accuracy?

question

Status: Open.

#919 In bbuchfink/diamond;

· linweiliarchaea opened on Dec 17, 2025

Clarification on --ext Extension Modes for Incremental Cluster Expansion

question

Status: Open.

#918 In bbuchfink/diamond;

· linweiliarchaea opened on Dec 13, 2025

DIAMOND blastx extremely slow during "Computing alignments..." stage

idea

Status: Open.

#917 In bbuchfink/diamond;

· hliu45749-ops opened on Dec 9, 2025

<code>--soft-masking</code> does not accept documented value <code>none</code> and <code>seg</code>

Status: Open.

#916 In bbuchfink/diamond;

· bernt-matthias opened on Dec 8, 2025

<code>--swipe</code> not producing any output

Status: Open.

#915 In bbuchfink/diamond;

· bernt-matthias opened on Dec 5, 2025

Segmentation fault during distributed multiprocessing run on HPC cluster (DIAMOND v2.1.13)

Status: Open.

#913 In bbuchfink/diamond;

· hughuang12 opened on Nov 20, 2025

Subsetting input files result in higher number of aligned reads

idea

question

Status: Open.

#912 In bbuchfink/diamond;

· laurentijn opened on Nov 17, 2025

Questions regarding diamond database incompatibilities and updates

question

Status: Open.

#910 In bbuchfink/diamond;

· bernt-matthias opened on Nov 12, 2025

[Taxonomy Output Bug] skingdoms field still outputs 0 in v2.1.13, despite adding support for new NCBI ranks

feature request

Status: Open.

#904 In bbuchfink/diamond;

· dskwei opened on Oct 13, 2025

<code>diamond view</code> sometimes produces faulty BTOP strings

Status: Open.

#898 In bbuchfink/diamond;

· imLew opened on Aug 22, 2025

Create multi-platform Docker image on release

feature request

Status: Open.

#895 In bbuchfink/diamond;

· nuno-agostinho opened on Aug 6, 2025

Diamond Blastp - Failed to allocate sufficient memory. Please refer to the manual for instructions on memory usage.

Status: Open.

#885 In bbuchfink/diamond;

· Oceazh opened on Jun 30, 2025